Query= MSMg01no349_h11.b1 MSMg01no349_h11.b1 CHROMAT_FILE:
MSMg01no349_h11.b1 PHD_FILE: MSMg01no349_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:05 2005
(630 letters)
>mm_chr17_89049016_89050045
Length = 1030
Score = 1172 bits (606), Expect = 0.0
Identities = 623/630 (98%), Gaps = 3/630 (0%)
Strand = Plus / Minus
Query: 4 ggaattccagacaggacactggaggcaggagccaatccagagccacggagaggtgagcat 63
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 ggaattccagacagaaaactggaggcaggagccaatccagagccacggagaggtgagcat 902
Query: 64 gctcactggtgtgctctgcaggatttgctctgtttgattggtttatatagcccgaggtca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 gctcactggtgtgctctgcaggatttgctctgtttgattggtttatatagcccgaggtca 842
Query: 124 cctgcccaggagtggcaccacccccagtggtcgaggccctcccatgtcagtcattaatca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 cctgcccaggagtggcaccacccccagtggtcgaggccctcccatgtcagtcattaatca 782
Query: 184 agaaaatgtccccagacttgcccagtcatatggagacattttctcaattgaggattcctc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 agaaaatgtccccagacttgcccagtcatatggagacattttctcaattgaggattcctc 722
Query: 244 ttcccagatggctctagcttatgttagagtgga---aacaacaacaacaacacaaaacac 300
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 721 ttcccagatggctctagcttatgttagagtggaaacaacaacaacaacaacacaaaacac 662
Query: 301 aaaaccttaagcaacacactttatcttagaattgtttatcagttctgtaagttgaagaaa 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 661 aaaaccttaagcaacacactttatcttagaattgtttatcagttctataagttgaagaaa 602
Query: 361 actgatgttaatgaacatgacccttgtccacagaaaggcaaactggttgtgttaggctaa 420
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 601 actgatgttaatgaacatgacccttgtccacagaaaggcaaactgattgtgttaggctaa 542
Query: 421 gaggattgtgttggccatttgtcagcagaggctcagagcatctagcacagtggttctcca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaggattgtgttggccatttgtcagcagaggctcagagcatctagcacagtggttctcca 482
Query: 481 cctacctaaggctgcaagcctttaccatggctcctcacggtgtgctggtccctaatcata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cctacctaaggctgcaagcctttaccatggctcctcacggtgtgctggtccctaatcata 422
Query: 541 atattttgttgctacttcataactgtaatttgctactgttatgaattatagtgtaaatat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atattttgttgctacttcataactgtaatttgctactgttatgaattatagtgtaaatat 362
Query: 601 ctaatagacaacccttgtgaaaggatcgtt 630
||||||||||||||||||||||||||||||
Sbjct: 361 ctaatagacaacccttgtgaaaggatcgtt 332
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_h11.g1 MSMg01no349_h11.g1 CHROMAT_FILE:
MSMg01no349_h11.g1 PHD_FILE: MSMg01no349_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:05 2005
(557 letters)
>mm_chr17_88870728_88871684
Length = 957
Score = 990 bits (512), Expect = 0.0
Identities = 544/558 (97%), Gaps = 8/558 (1%)
Strand = Plus / Plus
Query: 1 agtatgtagaccaggctgtctggaactcaaagaaatctgcctgcttttgcctcccaactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 agtatgtagaccaggctgtctggaactcaaagaaatctgcctgcttttgcctcccaactg 266
Query: 61 atggggttaaagccatgcaccaccatgtccaccctactccattttctttaatgcgtatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 atggggttaaagccatgcaccaccatgtccaccctactccattttctttaatgcgtatgt 326
Query: 121 cgtcaataaatgcatgtgtatgcactgtgtacatacaggagtctgaaaaaggccagaagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cgtcaataaatgcatgtgtatgcactgtgtacatacaggagtctgaaaaaggccagaagg 386
Query: 181 catcaaattacctggaattggaggcaaggtggttgtaagcc-tcatgcagatgccgggaa 239
|||||||||||||||||||||||||||| ||||||| |||||||| |||| ||||
Sbjct: 387 catcaaattacctggaattggaggcaag------gtaagccatcatgcaggtgccaggaa 440
Query: 240 gtgaacccagttctctctgtaagaaaagctagtactcttaacccttgagccatctctcta 299
||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgaacccagttc-ctctgtaagagcagctagtactcttaacccttgagccatctctcta 499
Query: 300 gtcccaggctcgaacttttgatgttgatctgcctgcctctgtctccttaaatgctaggat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtcccaggctcgaacttttgatgttgatctgcctgcctctgtctccttaaatgctaggat 559
Query: 360 ttcaggtctgtgctgcacacctcaggcaattgaagtgttcagagaagggatggggaagtt 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttcaggtctgtgctgcacacctcaggcaattgaagtgttcagagaagggatggggaagta 619
Query: 420 agagctagagaatgcatgggaaggatactgtctcaagttaggtagagtttgagaaagaga 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 620 agagctagagaatgcatgggaaggatactgtctcaagttaggtagagtttgagaaagaaa 679
Query: 480 agtctgttcatgagaaggagggttcagaaattgtaacacaaaaattggcaagctatcaca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 agtctgttcatgagaaggagggttcagaaattgtaacacaaaaattggcaagctatcaca 739
Query: 540 agtaaggttaggtgagaa 557
||||||||||||||||||
Sbjct: 740 agtaaggttaggtgagaa 757
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
