BAC Information

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BAC

Clone NameMSMg01-349J10
Chromosome17 (Build37)
Map Location 62,729,304 - 62,729,744
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043560
Downstream geneEfna5, Fbxl17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349J10.T7 (MSMg01no349_j10.b1)MSMg01-349J10.TJ (MSMg01no349_j10.g1)
ACCAG461408AG461409
length7371,414
length of high quality
(start - end)
445 (62 - 506)---
definitionCHROMAT_FILE: MSMg01no349_j10.b1 PHD_FILE: MSMg01no349_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:14 2005CHROMAT_FILE: MSMg01no349_j10.g1 PHD_FILE: MSMg01no349_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
CATTCTTTGAAGACAATGAATAAAATCAATGACTTGATCAAAATGCTTGA
AAATTCCTGAGTTTCGCATTCCAAATGTGACATTTGGAAAACATGAGCTC
AGAACCCACAAACCAAAAGCAGATGAAACCTTTGCAATGGATTCTAGCAA
ACTTAGAGTTTCCCAAACTCTAGGGGGCAAATCCTATGGAGTCAAGTGCT
GGTTTTCACAACTGTAGCCTATTACCAACCAAATCAGAACCAACCAAGGA
GCAGGTCCCCAAGACAGACAGACAGACAGACAGACAGCACCTTTGCCAAG
GTCAGCAGCAAGACTGAACTGCTCAACGTCGAAAGGCATATAACCATACA
TTAAGTTAGTAGCTCTCTTTTAGAAACTCTCCCCATTAAGAAAGCAAAAA
GGAGCCTGAAAACCAGTTTCATGTAAGAAAAGGAGTGAGAAACAAACATA
TCTTAAAGAAGCTAAAAATAAAAAGATTACAAAATCTAGAAAAATTATAC
GATAGACTTTTATTTGATAATATTCTCAGACTCCTTTAGTGCCTTTCTTT
CCATTTTAATTGTACTTCTTCTTACCGCTTCCTATGCTATCTTTTTCTAT
AACAGGAACGGAAAGATAATTTATTCTTGCTAGCACTGCTTTGGAGCTCG
TTTTACTTCCCAGTCCCGAAATGTATACTCTTATATG
TATGGCGAGCGGGCGAGCGCGTGCGGAGCGGCGCGGCGTGACTGCGGCGA
CCCGTAGTCGCCGTCATCGACGCGCGGCGAAAGGTATCGCTGCCGCGATA
GCGCGAGTACGCGCGCGGGAGGCGACGGACGCCGACGCGGCGCGCGCTGA
CTATCGGGCGTGATGGGGAGATGTGGTGACCAGAGACGCATAGACGGATG
TGCGCATGCGCTCTGGAGAGTTCGTTCGACGGCGTCGATTGTACACCGGT
AAACATGAATAGAGCGACGATCGGTACGCGCGCGCACCAGCTCATCCCGC
GCTTATTTGCGGCGCCTACACGACTAATTCCAATATTCTTAACATCATAT
TTTACCGCACAACTCCGCCGATATACGCCGACAGCGGCGTCGCACTCTGC
GTATGAGTCACGCCGTGCTGCCCCGCGCGNATCATCTCGAGATACAATAA
TAATATAATATAGTATGACACACGCACTCCGCCTGCGCTATTGTAGCNCG
CGCGGAGATNATCGTAGGATGCGCAGATCTAGTTATAACGCCGCAGCGCC
GTAGCCTATAAAGGTTCACGTCGTTCCATTCGCGGACGCCGCAACGTATA
TTCGGCGCGATTATCCACTACACTACATTAATACGCCCGATACTATTATC
CGTCACCAGCGCTAACCAGCCGCGTCTACTTTATTATATTATTTTTTTAT
TGCGAGCGGCTCCGATTGATGCCTTTATACATCGCTCTTACGTCTGGTCT
GCCGTCGGTCGGCTGTCGGTCGTGTATTTATCGCCAGCCGGCGTAGCACC
ATAGACACTAATGCACCGCGCTGTTAATATGCTCAACTCAATTTAGTTTT
ATCCGGGAGATGCAAACAGTAACACAAACCGTATGTTNATCCCCGCGCCC
ACTCTGTTCTGTGTGTTTTCTGGTCTTCATCACCACATCTGTTGCCGCTT
GCTTCGTCTACTCTTCATTGATTCTATATCTCCGTACCCCCTCCTACCAC
CCTTCGCGCTCATCTCGCTAACATAGATATTACGTTACATCTTATATATT
TATATATCGCGTACGCCCGTATNCGTCATCGGTAGCTAGTATGTCTCCGC
GCACCGCCACATATACGTATTCATTAATACTGGCACCGCATATAATGCGC
ATCTTTATCGATACTGTCCTCTTGCCGCTTACCGCGACTCTAGCGTTCCG
CGTGTTGCAGCGTTCTTACTCAGAGTACCNCTCGACTCGATGCTGTCTCT
TATACCGCGATCTCTTACCACCGCACGATCTTANTTNACGCGTCTATCTA
CTCTAATACTTATGACTCTTCTCTTACTGCGCCAGCCGTACAGATNGTTA
ATCGTGGAGATCTCACACACTGCGTATTTACTGGAGCGCTCTGCATGTCT
CTACTGTCTCCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_j10.b1 MSMg01no349_j10.b1 CHROMAT_FILE:
MSMg01no349_j10.b1 PHD_FILE: MSMg01no349_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:14 2005
         (445 letters)



>mm_chr17_62729104_62729948
          Length = 845

 Score =  818 bits (423), Expect = 0.0
 Identities = 438/445 (98%), Gaps = 4/445 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacaatgaataaaatcaatgacttgatcaaaatgcttgaaaattcctgagtttcgcattc 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gacaatgaataaaatcaatggcttgatcaaaatgcttgaaaattcctgagtttcgcattc 260

                                                                       
Query: 61  caaatgtgacatttggaaaacatgagctcagaacccacaaaccaaaagcagatgaaacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaatgtgacatttggaaaacatgagctcagaacccacaaaccaaaagcagatgaaacct 320

                                                                       
Query: 121 ttgcaatggattctagcaaacttagagtttcccaaactctagggggcaaatcctatggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgcaatggattctagcaaacttagagtttcccaaactctagggggcaaatcctatggag 380

                                                                       
Query: 181 tcaagtgctggttttcacaactgtagcctattaccaaccaaatcagaaccaaccaaggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaagtgctggttttcacaactgtagcctattaccaaccaaatcagaaccaaccaaggag 440

                                                                       
Query: 241 caggtccccaagacagacagacagacagacagacagcacctttgccaaggtcagcagcaa 300
           ||||||||||||||||||||||||||||||||    |||| |||||||||||||||||||
Sbjct: 441 caggtccccaagacagacagacagacagacag----caccgttgccaaggtcagcagcaa 496

                                                                       
Query: 301 gactgaactgctcaacgtcgaaaggcatataaccatacattaagttagtagctctctttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gactgaactgctcaacgtcgaaaggcatataaccatacattaagttagtagctctctttt 556

                                                                       
Query: 361 agaaactctccccattaagaaagcaaaaaggagcctgaaaaccagtttcatgtaagaaaa 420
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 557 agaaactctccccattaagaaagcaaaaaggagcctgaaaaccaatttcatgtaagaaaa 616

                                    
Query: 421 ggagtgagaaacaaacatatcttaa 445
           |||||||||||||||||||||||||
Sbjct: 617 ggagtgagaaacaaacatatcttaa 641


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space:   363225
Effective search space used:   363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)