Query= MSMg01no351_i18.b1 MSMg01no351_i18.b1 CHROMAT_FILE:
MSMg01no351_i18.b1 PHD_FILE: MSMg01no351_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:49 2005
(469 letters)
>mm_chr17_5445787_5446655
Length = 869
Score = 853 bits (441), Expect = 0.0
Identities = 462/469 (98%)
Strand = Plus / Minus
Query: 1 gcaatttagcttggacggtagtcctgtacaatagaaaagaagaaaagagaaaagaaggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gcaatttagcttggacggtagtcctgtacaatagaaaagaagaaaagagaaaagaaggca 610
Query: 61 gctgaaggaaacgatatgtatcgctctcttgtagaaaaatatctagtaaattatgaaatg 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 609 gctgaaggaaacgatatgtatcactctcttgtagaaaaatatctagtaaattatgaaatg 550
Query: 121 tgacagttgtcaaggggattcctggatgatcattaagagtaacaatccaactgatctcat 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 549 tgacagttgtcaaggggattcctggatggtcattaagagtaacaatccaactgatctcat 490
Query: 181 agaaagagccaggaaaaaagaaaacactctgcagtaaagaaaaatggaaaggaagactct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 agaaagagccaggaaaaaagaaaacactctgcagtaaagaaaaatggaaaggaagactct 430
Query: 241 gaaatcgcaactttactatgctcaagaaagacacattcgtcagcctgggacagatacagg 300
||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 429 gaaatcgcaacttcaccgtgctcaagaaagacacattcgtcagcctgggacagttacagg 370
Query: 301 atggggttctgaaagacagagtaacagaatcctggatgtgaatgctgagcccccagcttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 atggggttctgaaagacagagtaacagaatcctggatgtgaatgctgagcccccagcttg 310
Query: 361 ggctcgcttcaggggagttacagctgtacttatgcttgaccttgcctgtgttgatcgttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 309 ggctcgcttcaggggagttacagctgtacttatgcttgaccttgcctgtgttgattgttg 250
Query: 421 tagtactctacaaggtagatacagccctggggagctggtgcagatgctg 469
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tagtactctacaaggtagatacagccctggggagctggtgcagatgctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space: 394281
Effective search space used: 394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no351_i18.g1 MSMg01no351_i18.g1 CHROMAT_FILE:
MSMg01no351_i18.g1 PHD_FILE: MSMg01no351_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:49 2005
(463 letters)
>mm_chr17_5216261_5217123
Length = 863
Score = 731 bits (378), Expect = 0.0
Identities = 444/470 (94%), Gaps = 12/470 (2%)
Strand = Plus / Plus
Query: 1 cacagggccaaaggtgtaactaggaagacttgagactggtctaatgatattttttttaat 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 cacagagccaaaggtgtaactaggaagacttgagactggtctaatgatattttttttaat 258
Query: 61 tactcatattntggaaaaatgtatcaaaatgtaaatgtagtagttactacatgtgactca 120
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 259 tactcatatt-tggaaaaatgtatcaaaatgtaaatgtagtagttactacacgtgactca 317
Query: 121 aatcaaaagaaaagcttagagccgggcctggtggcgcacgcctttgatcccagctcttgg 180
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 318 aatcaaaagaaaagcttagagccgggcatggtggcgcacgcctttaatcccagctcttgg 377
Query: 181 gaggcagagacaggggaatttctgagttcaaggacagcctggtctacagagtgagttcca 240
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 378 gaggcagagacaggggaatttccgagttcaaggccagcctggtctacagagtgagttcca 437
Query: 241 ggacagccagggctatacagagaaaccctgtctcgaaaaaaaaacaaaaa-aaaaacaaa 299
||||||||||||||| |||||||||||||||||| ||||||||| ||||| |||||||||
Sbjct: 438 ggacagccagggctacacagagaaaccctgtctcaaaaaaaaaa-aaaaacaaaaacaaa 496
Query: 300 aaaa------aaaaaacaaaagaaaagaaaagaaaagaaaagcttagggggttggctgca 353
|||| ||||||||||| ||| |||| ||||||||||||||||||||||||||||
Sbjct: 497 aaaaccaaaaaaaaaacaaaa--aaacaaaa-aaaagaaaagcttagggggttggctgca 553
Query: 354 gacagggcccggacacaaacggccgactcgtactggactcgcatggatgggctttgactt 413
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 554 gacaggacccggacacaaacggccgactcgtactggactcgcatggatgggctttgacat 613
Query: 414 ctaaatgaacttctaatatcagcatacactgtttttctttaattccccca 463
||||||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct: 614 ctaaatgaacttctaatgtcggcatatactgtttttctttaattccccca 663
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space: 386409
Effective search space used: 386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
