BAC Information

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BAC

Clone NameMSMg01-353I13
Chromosome17 (Build37)
Map Location 79,653,284 - 79,653,697
singlet/doubletsinglet
Overlap genenone
Upstream geneCrim1, Fez2, LOC100043888, Hdac1-ps, Vit, Strn, Heatr5b, 2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812
Downstream geneLOC383277, Cdc42ep3, LOC639964, AW061290, Cyp1b1, EG668821, Arl6ip2, LOC625074, Hnrpll, Gpx4-ps, Galm, Sfrs7, 4930560E09Rik, Gemin6, Dhx57
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353I13.T7 (MSMg01no353_i13.b1)MSMg01-353I13.TJ (MSMg01no353_i13.g1)
ACCAG464387AG464388
length786796
length of high quality
(start - end)		418 (51 - 468)366 (83 - 448)
definitionCHROMAT_FILE: MSMg01no353_i13.b1 PHD_FILE: MSMg01no353_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:26 2005CHROMAT_FILE: MSMg01no353_i13.g1 PHD_FILE: MSMg01no353_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTATCTTTTCTCTTTTAGTGTAATCTAATTTTGCCTCTT
TTCATTAAGCTGTGCTTATGATACATAGGATATCATGGTCTTCTAAATGT
ATGCTTGCTGTTCTCCCGGCAAATTGTATTTTCCAAATAGCTGTTCTTTC
TAGGACTATTTGTCTATTAGAAGCATGTTACAATTTTCCTAGTGGTAGCA
GAAAGCTGGGTTGGTTGGTTGTGGTACAGCAATCCTAGAGCTCTGGGGTT
TATGTTTCCTCGGGTTCCTATTCCCTAAGGACACAGCATTCTGATTTTGA
CCAAATTTCAGGACGTTTGCCCGTGATCTAATAAATGGATGTATGCATAC
TGTTTATATCAGTAAACTGTGCGGCTGATGTCCAACACCCCAGACCTTTT
GTTACGGAGTAAACTGCTGGGGGCCTGCAGAAGCTCGTGGATTTTATCAT
GGGAGTTTGCCTCTCCTGCTGAAAGGCAGCTGCTTGCCTTGCGTATGTGT
ACCACCTGTCATACAGGCCACTTCTTTTTCTTGTCTTTGAACGACAACCT
TATATTTTCCCTACAACAAAAATTGTGTCCGCCCGCCTTTTCTTGTCTCC
CCCGTTTTTACCTACTTTCATTTCACCATCAATTTACCTTCCCGCCTCCT
TTTCCCCTTCTAAACACTCCCCCCCCCTTTACCCTATCCCTATCCCTTAT
TCTCACCATACCCCGCCTTATCCTTCCCCCCCTCTN

NNNCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTCTGAGAGCCAGGCC
TTCCTTTAATTCAATCAGAAAACAGTGGGATACCTCCTGATAGTTGATAG
TTGTCATACCACTGCTGTACCGGTGGGTGTGTATTGCCTGGTAGATCAGT
ATTGTTGTGTATAGGGTCTACTATTAGATATCACTGATGGCTTTTCTACT
CCAGAAGCTGGCAGATGGTCTTCCTTCAATGTGACAGTAGCTGGTACGGA
AGATGTTTCCAGGCAACCTCTATCTTGACTTCTCTTTATCATTCAACCAA
AGTGTGTTGTTTCTTCAGCAAGAGAGTCTTACCATCTAGCTATGGTGGGC
CACTCAAAGCCATGGCAATAGCCTGTTGTTTGGGCGATCTCTCTGTGGTC
TTCTAACTCATAGGGAAGTGGCTCATAGGGACGTATCCGATATCTGGGAC
CGACTTTTTAATTTTATAATTTTTGCCCCATGAAAGAACCATTTCCCACC
CTTGCAGGGTTTTTCTGTCCTCTTTTTTTTTTTAAAAATTCTCTTCTTTC
TATATACTTTTTCCGTGCCGTTTCTTTTTTCTACCAATCCTTTTTATCTC
TTTGCTTTTTGTTCCCCCCCTTTTTTCTTTTTTCTCTTCCTTCCTTCCCT
TTTTTTTTCTTTTCCATTTTTTTTTCTTTCCCTCCCTCTTCTTTTACACA
CCCCCCCCTTTCTATTCCTACCCTTTTTTTCTTTCTTTCTTCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_i13.b1 MSMg01no353_i13.b1 CHROMAT_FILE:
MSMg01no353_i13.b1 PHD_FILE: MSMg01no353_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:26 2005
         (418 letters)



>mm_chr17_79653080_79653897
          Length = 818

 Score =  781 bits (404), Expect = 0.0
 Identities = 412/416 (99%), Gaps = 4/416 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttatctt--ttctcttttagtgtaatctaattttgcctcttttcattaagctg 62
           ||||||||||||||  |  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gaattctttatcttaat--tcttttagtgtaatctaattttgcctcttttcattaagctg 561

                                                                       
Query: 63  tgcttatgatacataggatatcatggtcttctaaatgtatgcttgctgttctcccggcaa 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgcttatgatacataggatatcatggtcttctaaatgtatgcttgctgttctcccggcaa 501

                                                                       
Query: 123 attgtattttccaaatagctgttctttctaggactatttgtctattagaagcatgttaca 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 attgtattttccaaatagctgttctttctaggactatttgtctattagaagcatgttaca 441

                                                                       
Query: 183 attttcctagtggtagcagaaagctgggttggttggttgtggtacagcaatcctagagct 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 attttcctagtggtagcagaaagctgggttggttggttgtggtacagcaatcctagagct 381

                                                                       
Query: 243 ctggggtttatgtttcctcgggttcctattccctaaggacacagcattctgattttgacc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctggggtttatgtttcctcgggttcctattccctaaggacacagcattctgattttgacc 321

                                                                       
Query: 303 aaatttcaggacgtttgcccgtgatctaataaatggatgtatgcatactgtttatatcag 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aaatttcaggacgtttgcccgtgatctaataaatggatgtatgcatactgtttatatcag 261

                                                                   
Query: 363 taaactgtgcggctgatgtccaacaccccagaccttttgttacggagtaaactgct 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 taaactgtgcggctgatgtccaacaccccagaccttttgttacggagtaaactgct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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