BAC Information

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BAC

Clone NameMSMg01-353O07
Chromosome17 (Build37)
Map Location 65,717,241 - 65,717,506
singlet/doubletsinglet
Overlap geneE130009J12Rik
Upstream geneLOC100043582, Man2a1, 4930583I09Rik, LOC100043871
Downstream geneLOC668655, LOC674701, Vapa, Txndc2, Rab31, Ppp4r1, Ralbp1, LOC100043873, LOC100043592, Twsg1, Ankrd12, 5430411C19Rik, Ndufv2, ORF19, Ddx11, LOC100043599, LOC100043875, 1110012J17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353O07.T7 (MSMg01no353_o07.b1)MSMg01-353O07.TJ (MSMg01no353_o07.g1)
ACCAG464659AG464660
length767780
length of high quality
(start - end)
352 (77 - 428)275 (81 - 355)
definitionCHROMAT_FILE: MSMg01no353_o07.b1 PHD_FILE: MSMg01no353_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:53 2005CHROMAT_FILE: MSMg01no353_o07.g1 PHD_FILE: MSMg01no353_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:53 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTTTACCTCTGAGCCCCATTTTTTAATGGGGTTATTTGA
TTTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATATTGGATATTA
GTTCACTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGT
GGCCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAA
TTTTATGAGGTCCTATTTATTGATTCTCGATCTTACAGCACAAGCCATTG
CTGTTCTATTCAGGAATTTTTCTTTTTGTACCCATATCTTCGAGGGTTTT
CCCTACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTT
CCTTAATCCACTTAGATCCGACCTTAGTACATGGAGATAGGAATGGATCA
ACTCGCATTCTTCTACATGATAACCGCCAGTTGTGTCAGCACCATTTGCT
GAAAATGCTGTCTTTTTTCCACCGAATGTTTTTTGCTCCCCTGTTCCCGA
TCTATTGATTATATTCGTGTCGCCATCTCCCCTTGTTTTTTTACTCCACT
CCATTGTTCCCCCTTGCCCTTTCGTTTTACCTCCTTTTTTGCCACTTTCC
AACCCCTTTTGTTTCCGTTCCTCCCCTCTTTTCCCTTTCCTTGCCCGCAC
CCCTCCCTTATCCCTTCCCCTTTCCCTTTTAACTACCTTTCTCCCCTTTT
TTCTTTTCCTTTTTCTG
TCCGATACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTGAAAAACAGAGAGGGAT
GCTCCCCAGAACAAGCTGCCTAGTGTTAGTAGTCCTATCCAGGAGCTCTG
GGTTTGATTGAACCTGCCTCACATGGTTACAAGGAAGATAGTCATTGAGG
AAGGCTCCTGGTGACAACCTCAGCGTTTTACATGCATGCATCTTTACATG
CATGCACACCTTCATCAAAACATCTAAACACGCACACTACATACGTGTAC
ATGCAGAAAAGGAAACAAAAAATACACACAAGTGTGAACGCGTGCACACA
CACTCACACATGCTTGCATGCATGCATTAAAAGTTAGCAACCACAATATA
AAGTTAGTCTGTGTCTTCCTATTGGGGAACTGAACTATTAATGTTGCAAA
AACCAATGAGCAGCATTTGTTGCTTCCTGATATCCTATTGTGGGATGTCT
GTCTACCTGTCTGCGTCTATCTATCTATCTCTGTGCTGTGTGTGCTTCTG
CTTCTTTTTTTTCCCCTGTCTCTTCCCTCTTTTTCCTTTTTCCCTTTCTT
TCCTTTTTTCTTCCATTCTTTTTATCGTCTTTATCCCCCTTTTCCCCCCT
TTTTTCCTTTTTTTGCCTCCTTCCTCCCTCTTTTTCTCCCTATCCCTTTT
TTTCCGCTTCCTCCCTTCATCTTTCCGCTTCCCCCCGCCCACTCTTTTCC
CTCCCTTTTTNTCTTTCTTTTCTTCCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_o07.g1 MSMg01no353_o07.g1 CHROMAT_FILE:
MSMg01no353_o07.g1 PHD_FILE: MSMg01no353_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:53 2005
         (275 letters)



>mm_chr17_65717041_65717708
          Length = 668

 Score =  466 bits (241), Expect = e-136
 Identities = 263/273 (96%), Gaps = 7/273 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgaaaaacagagagggatgctccccagaacaagctgcctagtgttagtagtcctatcc 60
           ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 cttgaaaaacagagaggcatgctccccagaacaagatgcctagtgttagtagtcctatcc 260

                                                                       
Query: 61  aggagctctgggtttgattgaacctgcctcacatggttacaaggaagatagtcattgagg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| 
Sbjct: 261 aggagctctgggtttgattgaacctgcctcacatggttacaaggaagatagtc--tgag- 317

                                                                       
Query: 121 aaggctcctggtgacaacctcagcgttttacatgcatgcatctttacatgcatgcacacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aaggctcctggtgacaacctcagcgttttacatgcatgcatctttacatgcatgcacacc 377

                                                                       
Query: 181 ttcatcaaaacatctaaacacgcacactacatacgtgtacatgcagaaaaggaaacaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ttcatcaaaacatctaaacacgcacactacatacgtgtacatgcagaaaaggaaacaaaa 437

                                            
Query: 241 aatacacacaagtgtgaacgcgtgcacacacac 273
           ||||||    ||||||| |||||||||||||||
Sbjct: 438 aataca----agtgtgagcgcgtgcacacacac 466


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 668
Length adjustment: 9
Effective length of query: 266
Effective length of database: 659
Effective search space:   175294
Effective search space used:   175294
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)