BAC Information

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BAC

Clone NameMSMg01-354M13
Chromosome17 (Build37)
Map Location 79,018,151 - 79,191,578
singlet/doubletdoublet
Overlap geneVit, Strn, Heatr5b
Upstream geneLOC100043887, LOC668795, LOC383275, Crim1, Fez2, LOC100043888, Hdac1-ps
Downstream gene2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812, LOC383277, Cdc42ep3, LOC639964, AW061290, Cyp1b1, EG668821
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354M13.T7 (MSMg01no354_m13.b1)MSMg01-354M13.TJ (MSMg01no354_m13.g1)
ACCAG465328AG465329
length753767
length of high quality
(start - end)		583 (49 - 631)333 (79 - 411)
definitionCHROMAT_FILE: MSMg01no354_m13.b1 PHD_FILE: MSMg01no354_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:02 2005CHROMAT_FILE: MSMg01no354_m13.g1 PHD_FILE: MSMg01no354_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,191,176 - 79,191,578)(79,018,151 - 79,018,483)
sequence
NNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTTGATATCTGCTTTTAAGCAAAGTCCAGGGTTACCCTTGA
CCTGGTGCTAAAAGTACAAGACTCCCTCCCCATTCTGTTCTCATAAAAAG
TCTTTTAAAAAATAATTTTGTAACTACATTTCCTGACTACACACTGTTTT
TCTACAATAGGGACTGTCAGACCTGTGATCGTAATGCAACCCACAAGCGT
GTTTTGTAAATAGTTTACTGGGATTCATCACACTCATTTCTATAGCATTG
TCTGTTGTGTTCTCTAAGTCCTTTCTGCCTGCTTCCATAGTGTAGCAGCA
GAGCTGAATAACTGCCTGAGAGAGAATGTGGCCTGCAAAGCCAAAAATAG
TATCTGACCCTTTACAGGAAAGTTCTGCTAGGGCCTGTTCTGAGAGAACT
ACAAGCCCATTTGGGAAAGCCATGGTAATCATGTATTTTGCTGTAGCTGT
CAGTGTCTATCCTGTAGTTGTCTGTGTTTGAGTGGTCTACTGCTGCACTG
AGACACTTGAGTTTTATTTTTTAGATATTGTGGATCATAAGTGCTTTATC
GAATTGTTTCCTATTTTTATGCATTGTCCTAGTCTGGGTGAACTTTCCCT
TGTACAGTCTGTTTTCCTTTGCAGAAGACCTCCTAGTATTGCATCTCTCT
GACCTGATTCCAATGGCATTCATGGCCTGCAACTGATCATATACAACCAC
TGC

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGATCTTCTTCCTATAGTAG
AATCCCACTGGATATTATCAATGTGACTGTTTTTTGAAGATGTTTTTATC
TCTATAACCCAAAGACTTAAATGACTTCTCAAGATTACACAGGTAGACTG
AGAGATCCTGGGGATGGAGAAACCATTGTCCTGACTCATGTACTCTCCGA
TGGCCCCACCAAGCTAGTCCACATTTCCAATCCAGTGTTCACACCATGGC
CCTAATTAAGCCAACGGATTACAAAACCAACCCAAAAGTCATGAATCTGG
GAAATGGAGCAGTTAAAGGTGGAAGGGGGTGTAGGTGGCAGTAATGGGGG
ATGGGAGGAAGNTNNNNNNNNNNNNNNNNNNNTNNNNNNNNNTNNNNNTN
NNTNNNNNNNNNNNNNTTTTNTTTTTTNNTTNTTTTTTTTTTTTNNNTTT
TNTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNT
TTTTTTTTTTNNNTTTTTTTTTTTTTTTTTTTTTTTTATTTTNTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTTTTTTTTTTN
NTTTTNTTTTTTTTTTTTTTTTTTTTTNNNTTTTTTTTTTTTTTTTNNNT
TTTTTTTTTTTNNTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTNNTTTT
TTTTTTTTTTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_m13.b1 MSMg01no354_m13.b1 CHROMAT_FILE:
MSMg01no354_m13.b1 PHD_FILE: MSMg01no354_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:02 2005
         (583 letters)



>mm_chr17_79191176_79192158
          Length = 983

 Score =  764 bits (395), Expect = 0.0
 Identities = 401/403 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttttgatatctgcttttaagcaaagtccagggttacccttgacctggtgctaaa 64
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gaattcttttgagatttgcttttaagcaaagtccagggttacccttgacctggtgctaaa 344

                                                                       
Query: 65  agtacaagactccctccccattctgttctcataaaaagtcttttaaaaaataattttgta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 agtacaagactccctccccattctgttctcataaaaagtcttttaaaaaataattttgta 284

                                                                       
Query: 125 actacatttcctgactacacactgtttttctacaatagggactgtcagacctgtgatcgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 actacatttcctgactacacactgtttttctacaatagggactgtcagacctgtgatcgt 224

                                                                       
Query: 185 aatgcaacccacaagcgtgttttgtaaatagtttactgggattcatcacactcatttcta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 aatgcaacccacaagcgtgttttgtaaatagtttactgggattcatcacactcatttcta 164

                                                                       
Query: 245 tagcattgtctgttgtgttctctaagtcctttctgcctgcttccatagtgtagcagcaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 tagcattgtctgttgtgttctctaagtcctttctgcctgcttccatagtgtagcagcaga 104

                                                                       
Query: 305 gctgaataactgcctgagagagaatgtggcctgcaaagccaaaaatagtatctgaccctt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 gctgaataactgcctgagagagaatgtggcctgcaaagccaaaaatagtatctgaccctt 44

                                                      
Query: 365 tacaggaaagttctgctagggcctgttctgagagaactacaag 407
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43  tacaggaaagttctgctagggcctgttctgagagaactacaag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no354_m13.g1 MSMg01no354_m13.g1 CHROMAT_FILE:
MSMg01no354_m13.g1 PHD_FILE: MSMg01no354_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:02 2005
         (333 letters)



>mm_chr17_79017951_79018683
          Length = 733

 Score =  644 bits (333), Expect = 0.0
 Identities = 333/333 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgatcttcttcctatagtagaatcccactggatattatcaatgtgactgttttttgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgatcttcttcctatagtagaatcccactggatattatcaatgtgactgttttttgaa 260

                                                                       
Query: 61  gatgtttttatctctataacccaaagacttaaatgacttctcaagattacacaggtagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatgtttttatctctataacccaaagacttaaatgacttctcaagattacacaggtagac 320

                                                                       
Query: 121 tgagagatcctggggatggagaaaccattgtcctgactcatgtactctccgatggcccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagagatcctggggatggagaaaccattgtcctgactcatgtactctccgatggcccca 380

                                                                       
Query: 181 ccaagctagtccacatttccaatccagtgttcacaccatggccctaattaagccaacgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaagctagtccacatttccaatccagtgttcacaccatggccctaattaagccaacgga 440

                                                                       
Query: 241 ttacaaaaccaacccaaaagtcatgaatctgggaaatggagcagttaaaggtggaagggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttacaaaaccaacccaaaagtcatgaatctgggaaatggagcagttaaaggtggaagggg 500

                                            
Query: 301 gtgtaggtggcagtaatgggggatgggaggaag 333
           |||||||||||||||||||||||||||||||||
Sbjct: 501 gtgtaggtggcagtaatgggggatgggaggaag 533


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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