BAC Information

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BAC

Clone NameMSMg01-355P08
Chromosome17 (Build37)
Map Location 64,712,393 - 64,712,811
singlet/doubletsinglet
Overlap genenone
Upstream geneFbxl17, Ppia-ps17_1026.1, LOC638867, LOC668677, A930002H24Rik, Fert2, LOC669778, Pja2
Downstream geneLOC100043582, Man2a1, 4930583I09Rik, LOC100043871, E130009J12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355P08.T7 (MSMg01no355_p08.b1)MSMg01-355P08.TJ (MSMg01no355_p08.g1)
ACCAG466218AG466219
length786767
length of high quality
(start - end)
245 (41 - 285)418 (69 - 486)
definitionCHROMAT_FILE: MSMg01no355_p08.b1 PHD_FILE: MSMg01no355_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:33 2005CHROMAT_FILE: MSMg01no355_p08.g1 PHD_FILE: MSMg01no355_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTCCCCCACCTGATAGTCAATCAACTAATGTGCCAAAAAACGGGTCATCG
GGCCCTCGGTCCCAGGGCCCTCAAAGATATGGGAACCGGTTTGTCAGGAC
CCAGGAAGCAGTCAGAGAGGCGACCCAGGAAGACCCACAAGGGTGGACCT
GCGTGCCGCCTCCGACTTCCTATTAATGCCTCTTATGAGTATTCAGCCGG
TGCCGGTGGAGCCTATACCATCCTTGCCCCCGGGAACCATGGGTCTTATT
CTCGGCCGGGGTTCACTCACCTTGCAGGGCTTAGTAGTCCACCCTGGAGT
TATGGATTGTCAACATTCCCCTGAAATACAGGTCCTGTGCTCATGCCCTA
AAGGCGTTTTTTCTATTAGTACAGGAGATAGGATAGCTCAGCTGCTGCTC
CTCCCTGATAATACCATGGATAACTTCTGCTGGACCTGAGATAAAGAATA
TGGTTTCCTCTCGTTATGATTCCTGCCCATTTGTTTGTATTTTTATTCGA
TAGATCTAAGCCTCGTTTTTTTTATCTCCGGCATTTAGTTTGAACGTTTT
CTTTGTTATTCTTTGCCATTATATGTTTCATTTCCTACCTCTCGGCTGTT
TCTCTTTGTTGGTTTTCCCTTCCCATGTCCTCTTATTTCTTTTTTTCCCT
CTCCTCCCCTCCTCTATCATTGGTCTTTTTTTTATATTCACACTCTGCTT
CTTCTATTTGTCTCTTCCTTTCTGTTTTTTCCCCCN
GTAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTGTTCTATGGGATTATAAAAGGTCCATGGCA
CGATTGAGTCCTAATTACTTAGGTAGGCATTCAAGTCACTTTTAAATCAC
CTTCCACACTTCATTTTTTTTTAATCAAATTGAAGAAAAATAAAAGACAA
GCATACTTGAGTTAGCAAGCAATTGTATAAACCTCTATGCCCTTTACATC
AAGGCTAACCAAGGAGAATTACTGGGTAGTCTACAGGTCTGATTATTGCC
ATGGTAATGACAGGAGTACACTGTGAAAAGAGCATATAACAATAGAATGT
ATAGACGTGCATGCACATTTATGGTCTATAGAGAGCTTATTAATCATGGC
ACCTCATATTGCAATGGCAGCTATCACAATCCAAAATAATGGGGGAAAGG
GCACCTACTACTCATTTTCTGGCAAATGCCAGTGTCTGTCTAACTCTTAA
TTGTCCAGGTAACTTTCCTTCAGTTTTGAAATTTATCACAAAAACATAAA
ATAAATAAAGGACTTTCAAGCAATTCCTCTGTAATCTCCGGGTTCTCCAT
TTTGTAACATTTCAGCCCCAGTTCTTTCTTGTGACCTCACCCCTTAATTG
ATAGTTTACTTTTTCCATGCGTAACATAATGGCCTGTTCTGAAGGCTTAA
TGTTCCTCGTTAAAAATTCTTACAAAACTCTTGGCTGTCTGCCAGTATCT
CCTTATTATGCTTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_p08.g1 MSMg01no355_p08.g1 CHROMAT_FILE:
MSMg01no355_p08.g1 PHD_FILE: MSMg01no355_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:33 2005
         (418 letters)



>mm_chr17_64712193_64713011
          Length = 819

 Score =  772 bits (399), Expect = 0.0
 Identities = 414/419 (98%), Gaps = 1/419 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgttctatgggattataaaaggtccatggcacgattgagtcctaattacttaggtaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ctgttctatgggattataaaaggtccatggcacgattgagtcctaattacttaggtaggc 560

                                                                       
Query: 61  attcaagtcacttttaaatcaccttccacacttca-tttttttttaatcaaattgaagaa 119
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 559 attcaagtcacttttaaatcaccttccacacttcattttttttttaatcaaattgaagaa 500

                                                                       
Query: 120 aaataaaagacaagcatacttgagttagcaagcaattgtataaacctctatgccctttac 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aaataaaagacaagcatacttgagttagcaagcaattgtataaacctctatgccctttac 440

                                                                       
Query: 180 atcaaggctaaccaaggagaattactgggtagtctacaggtctgattattgccatggtaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 atcaaggctaaccaaggagaattactgggtagtctacaggtctgattattgccatggtaa 380

                                                                       
Query: 240 tgacaggagtacactgtgaaaagagcatataacaatagaatgtatagacgtgcatgcaca 299
           |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 379 tgacaggagtacactgtgaaaagagcgtataataatagaatgtatagacgtgcatgcaca 320

                                                                       
Query: 300 tttatggtctatagagagcttattaatcatggcacctcatattgcaatggcagctatcac 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tttatggtctatagagagcttattaatcatggcacctcatattgcaatggcagctatcac 260

                                                                      
Query: 360 aatccaaaataatgggggaaagggcacctactactcattttctggcaaatgccagtgtc 418
           ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 259 aatccaaaataatgggggaaagggcacctactactcattttctggtaaatgtcagtgtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 819
Length adjustment: 9
Effective length of query: 409
Effective length of database: 810
Effective search space:   331290
Effective search space used:   331290
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)