BAC Information

Click to search

BAC

Clone NameMSMg01-356A04
Chromosome17 (Build37)
Map Location 79,474,074 - 79,643,373
singlet/doubletdoublet
Overlap geneQpct, LOC668812
Upstream geneLOC668795, LOC383275, Crim1, Fez2, LOC100043888, Hdac1-ps, Vit, Strn, Heatr5b, 2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425
Downstream geneLOC383277, Cdc42ep3, LOC639964, AW061290, Cyp1b1, EG668821, Arl6ip2, LOC625074, Hnrpll, Gpx4-ps, Galm, Sfrs7, 4930560E09Rik, Gemin6, Dhx57
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356A04.T7 (MSMg01no356_a04.b1)MSMg01-356A04.TJ (MSMg01no356_a04.g1)
ACCAG466258AG466259
length734757
length of high quality
(start - end)		599 (44 - 642)340 (76 - 415)
definitionCHROMAT_FILE: MSMg01no356_a04.b1 PHD_FILE: MSMg01no356_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:37 2005CHROMAT_FILE: MSMg01no356_a04.g1 PHD_FILE: MSMg01no356_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,642,779 - 79,643,373)(79,474,074 - 79,474,413)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTACAGCCTAACTTGACACTGTAGCCAAGAAAGTAGACATTGGGTA
GGTGACAGAGATAACAGGTGGTATGGCCAGGTCAAAATACACTATACACT
CAAATACAAATTCACTCAAAACATAGCCCCAGGGCTTGAAAATTGATTGA
TAAAAGGTTATTTTATGACAAAATAAATACCGAGGACAATCAACTTTAAA
ATAAATGCTTCCATCGGAAGGATCAAAGTGTTTACAAATCTGCGTCTGAA
AAATTGCAGAGATTCTCACTGTAGTGAAGAGTCCTCCAAGCCTCATGCAT
AACCAAGGTTACCTGCTGCTATCACTAATGGAAGATAGATGTAATCAAAT
TAAATTGATTGTCTTCTGACTGAGAATCAGAGCTCACAGAAGGGTGGCCA
GCCACATGGTGCTGAGAGCAAACAGAGCCAAGGAATAAGAATTTGGCTGT
GCTTGTGCAAGTGGGTCCAATGAAGAGTGACCCTGTCTCTCCCAACTGAA
AATAGGTTCTGTTAATATGTTGATGACTCTTCTTCTAGTCATTTTTGTAA
ACCATATTGCAAATTATTACACACTTTAATCTTTTTACACAGCATTACAG
TACAACTGATTGCCCATTTTATTAAAACCTGCGTANAAACACGATGATAT
TGCCCTCCCAATATCCGTTCATAGGAAAAAGCTG

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATCTCCTGAATGAGGGAGGCAGAG
CGTGTTCTTCTAGGAGGCAAATGGAAGGATTTTACCCAGGACAGAGCATC
AGTTATGCTGGATGCTGTCAGTAAGTCAGGGATGATAAAGACTGAGAGCT
GATCTTTGGATTTATTGATGTGTAGGTCGTAGGTGTGCTTGACACTTATG
TTTCAGTAGATGGAGGAGATGAAGCCTGAAGGATAGGCATAAGAACAGAC
CTCCTAGAAAGCCTGGGGGAAGTTAAGATAGACGTTCCAGTGATGTACCT
AAAAGTGACAAAATTGGCAGACTAGGTGTTGTTATTATATCTATTATTAT
AGTTTACATAACTGTTATCACTATGTTCCATGTATATCTAATAGAGAAGG
CCTTTTTATTGCACTATTAGGGCGAGATGTTGCGGCTTTGACTCATTGTC
CCCTTATGTTTTCCTTCATTCTTAGGTATTCCCACGTTCACTCGTTTTTG
TTTTCTCCTGCCCTTTCCACTTTTCCTTTTTCCCTTTTTCTTTCCTATCA
ACTTCCCTTCTTTTGTCATACTTTTCTCCTTCCCCTTCTTGTTTTTTCCC
CCTTACTTTATTTCTCGTTTTATCTTGTGTTACATCCTTCTCTTTTTTTT
CCCTCCTTCTTATCACCATTTTATGTTCCCCTGTTGTAGCCTCGCGCCCT
CTCGCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_a04.b1 MSMg01no356_a04.b1 CHROMAT_FILE:
MSMg01no356_a04.b1 PHD_FILE: MSMg01no356_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:37 2005
         (599 letters)



>mm_chr17_79642575_79643573
          Length = 999

 Score = 1143 bits (591), Expect = 0.0
 Identities = 594/595 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctacagcctaacttgacactgtagccaagaaagtagacattgggtaggtgaca 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 gaattctctacagccaaacttgacactgtagccaagaaagtagacattgggtaggtgaca 740

                                                                       
Query: 65  gagataacaggtggtatggccaggtcaaaatacactatacactcaaatacaaattcactc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gagataacaggtggtatggccaggtcaaaatacactatacactcaaatacaaattcactc 680

                                                                       
Query: 125 aaaacatagccccagggcttgaaaattgattgataaaaggttattttatgacaaaataaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aaaacatagccccagggcttgaaaattgattgataaaaggttattttatgacaaaataaa 620

                                                                       
Query: 185 taccgaggacaatcaactttaaaataaatgcttccatcggaaggatcaaagtgtttacaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 taccgaggacaatcaactttaaaataaatgcttccatcggaaggatcaaagtgtttacaa 560

                                                                       
Query: 245 atctgcgtctgaaaaattgcagagattctcactgtagtgaagagtcctccaagcctcatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 atctgcgtctgaaaaattgcagagattctcactgtagtgaagagtcctccaagcctcatg 500

                                                                       
Query: 305 cataaccaaggttacctgctgctatcactaatggaagatagatgtaatcaaattaaattg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cataaccaaggttacctgctgctatcactaatggaagatagatgtaatcaaattaaattg 440

                                                                       
Query: 365 attgtcttctgactgagaatcagagctcacagaagggtggccagccacatggtgctgaga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 attgtcttctgactgagaatcagagctcacagaagggtggccagccacatggtgctgaga 380

                                                                       
Query: 425 gcaaacagagccaaggaataagaatttggctgtgcttgtgcaagtgggtccaatgaagag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gcaaacagagccaaggaataagaatttggctgtgcttgtgcaagtgggtccaatgaagag 320

                                                                       
Query: 485 tgaccctgtctctcccaactgaaaataggttctgttaatatgttgatgactcttcttcta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tgaccctgtctctcccaactgaaaataggttctgttaatatgttgatgactcttcttcta 260

                                                                  
Query: 545 gtcatttttgtaaaccatattgcaaattattacacactttaatctttttacacag 599
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gtcatttttgtaaaccatattgcaaattattacacactttaatctttttacacag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no356_a04.g1 MSMg01no356_a04.g1 CHROMAT_FILE:
MSMg01no356_a04.g1 PHD_FILE: MSMg01no356_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:37 2005
         (340 letters)



>mm_chr17_79473874_79474613
          Length = 740

 Score =  650 bits (336), Expect = 0.0
 Identities = 339/340 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catctcctgaatgagggaggcagagcgtgttcttctaggaggcaaatggaaggattttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catctcctgaatgagggaggcagagcgtgttcttctaggaggcaaatggaaggattttac 260

                                                                       
Query: 61  ccaggacagagcatcagttatgctggatgctgtcagtaagtcagggatgataaagactga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaggacagagcatcagttatgctggatgctgtcagtaagtcagggatgataaagactga 320

                                                                       
Query: 121 gagctgatctttggatttattgatgtgtaggtcgtaggtgtgcttgacacttatgtttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagctgatctttggatttattgatgtgtaggtcgtaggtgtgcttgacacttatgtttca 380

                                                                       
Query: 181 gtagatggaggagatgaagcctgaaggataggcataagaacagacctcctagaaagcctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtagatggaggagatgaagcctgaaggataggcataagaacagacctcctagaaagcctg 440

                                                                       
Query: 241 ggggaagttaagatagacgttccagtgatgtacctaaaagtgacaaaattggcagactag 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 ggggaagttaagatagacgttccagtgatgtacctaaaagtgacaaaattggtagactag 500

                                                   
Query: 301 gtgttgttattatatctattattatagtttacataactgt 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgttgttattatatctattattatagtttacataactgt 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |