Query= MSMg01no356_a13.b1 MSMg01no356_a13.b1 CHROMAT_FILE:
MSMg01no356_a13.b1 PHD_FILE: MSMg01no356_a13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:39 2005
(638 letters)
>mm_chr17_47499119_47500157
Length = 1039
Score = 957 bits (495), Expect = 0.0
Identities = 516/523 (98%), Gaps = 2/523 (0%)
Strand = Plus / Minus
Query: 117 tattaataaggtctaaattttgctctttagatggcaaagcaggccaggccccgatctact 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1039 tattaataaggtctaaattttgctctttagatggcaaagcaggccaggccccgatctact 980
Query: 177 cctgttcagtatccagttcttcagtgaagcattcgacattgaagtcactgaatacgtgcg 236
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 979 cctgttcagtatccagttcttcagtgaagcattcgacattgcagtcactgaatacgtgca 920
Query: 237 ttacagtattgacagtgtagggtggctcatgaggactgaatgaatgaaggactgaatgaa 296
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919 ttacagtat-gacagtgtagggtggctcatgaggactgaatgaatgaaggactgaatgaa 861
Query: 297 tgaaggactgactgaatggatacagtggtgccccttttaggggcctggaattgtggcccc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 tgaaggactgactgaatggatacagtggtgccccttttaggggcctggaattgtggcccc 801
Query: 357 taaaagctgactcagtttaccaccctagctgtatgtgcaccacatcttgggttgctatgt 416
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 800 taaaaactgactcagtttaccaccctagctgtatgtgcaccacatcttgggttgttatgt 741
Query: 417 tgatagaggatgacctgaaggaacaattaaaatcaaagtccccaaaaggggctcagacga 476
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 740 tgatagaggatgacctgaaggaacaattaaaatcaaagtccctaaaaggggctcagacga 681
Query: 477 tcaaggtgcagaaggagacagcctcactcagggcagatggtataaaacataaaattccaa 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tcaaggtgcagaaggagacagcctcactcagggcagatggtataaaacataaaattccaa 621
Query: 537 atttcttcctaaatttatttgtgactactaaaaagtaagtgcaaataaattttagacatt 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 atttcttcctaaatttatttgtgactactaaaaagtaagtgcaaataaattttagacatt 561
Query: 597 cgtattaaaatgcaaataaatcagggtcaacacagc-gttgtg 638
|||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 560 cgtattaaaatgcaaataaatcagggtcaacacagccgttgtg 518
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1039
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1029
Effective search space: 646212
Effective search space used: 646212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no356_a13.g1 MSMg01no356_a13.g1 CHROMAT_FILE:
MSMg01no356_a13.g1 PHD_FILE: MSMg01no356_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:39 2005
(544 letters)
>mm_chr17_47339471_47340414
Length = 944
Score = 1036 bits (536), Expect = 0.0
Identities = 542/544 (99%)
Strand = Plus / Plus
Query: 1 caggcatttgggtgtggacacgtgagacaccacggcaggcctgttgaggtcagaggacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggcatttgggtgtggacacgtgagacaccacggcaggcctgttgaggtcagaggacaa 260
Query: 61 cctaagggagttggttctcttcttctaccatggggattctagggattaaactcagctctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctaagggagttggttctcttcttctaccatggggattctagggattaaactcagctctt 320
Query: 121 caaccgtggagccagctcaccagcctctgagatggtttacagtcatttccttccttattc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaccgtggagccagctcaccagcctctgagatggtttacagtcatttccttccttattc 380
Query: 181 ctcattccatttgtataaagatgcattattcgcttagcccctccccccttctaataaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcattccatttgtataaagatgcattattcgcttagcccctccccccttctaataaatg 440
Query: 241 aagagaacgtgaaacttaacgatctaatttagtaacctgggtttaaggaacatcattgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagagaacgtgaaacttaacgatctaatttagtaacctgggtttaaggaacatcattgat 500
Query: 301 ggctcattcgttcattcattcattcgttcgttcattcattcacaggctcactgatacctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggctcattcgttcattcattcattcgttcgttcattcattcacaggctcactgatacctt 560
Query: 361 agttcattgattccttcctttatttattctgcagatgtcaaagccttaccttgtgctgtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agttcattgattccttcctttatttattctgcagatgtcaaagccttaccttgtgctgtt 620
Query: 421 ttgcctctctgtctgcagcatgtcctcgccctcacagagcgctccttccagtgagtgaga 480
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 621 ttgcctctctgtctgcagcatgtcctcgccctcacagagcgttccttccagtgagtgaga 680
Query: 481 caatataacttagtaacaaatgcctgatgcctggcagatgtgtagggcatctgcagcagg 540
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caagataacttagtaacaaatgcctgatgcctggcagatgtgtagggcatctgcagcagg 740
Query: 541 caga 544
||||
Sbjct: 741 caga 744
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
