BAC Information

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BAC

Clone NameMSMg01-356J15
Chromosome17 (Build37)
Map Location 36,251,595 - 36,252,008
singlet/doubletsinglet
Overlap genenone
Upstream geneLy6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik
Downstream geneH2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356J15.T7 (MSMg01no356_j15.b1)MSMg01-356J15.TJ (MSMg01no356_j15.g1)
ACCAG466704AG466705
length761794
length of high quality
(start - end)		520 (33 - 552)414 (66 - 479)
definitionCHROMAT_FILE: MSMg01no356_j15.b1 PHD_FILE: MSMg01no356_j15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:22 2005CHROMAT_FILE: MSMg01no356_j15.g1 PHD_FILE: MSMg01no356_j15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:22 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCTTTGT
TCTTTTCTGAGCCACATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCC
ACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTT
AGGATAGGTAAAGATACTTTCACAATCTGTTGGTGGTCTTTTTGTCTTAT
TGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCAT
TTGCCAATTCTCAATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAA
TTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTCCTCCTCTA
TAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGAT
TTGACCTTAGTACAAGGAGATAAGTATGGATCGATTTGCATTCTTCTACA
CGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTTTCTTCCA
CTGGATGGTTTTAGCTCTCTTGTCGAAGATCAAGTGACCATAGGTGTGTG
GGTTCCTTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTGTCT
CTATACCAGTACCTTGCCGTTTTTATCATAATTGCTCTGTATTACAGCTT
TATGTCAGGTATGGTGATTCCTTCAGATGGTCTTTTATTCTTTATAAGAC
TTTTTGCTCCCTCAAGGTTTTTCCTATTCCCGATGCACTTTGTCATTTTG
CCCTTCCACTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCAGAGATCCACCTGCCTCTGTCTGTCAGGTGTTG
GGATTAAAGGTGTGTGCCACCAACATCCATCAAGAAACATTAATTTTATA
GACATAACACATTTTGAGTTGTAAAGAGACCTGATTGTAGGGTGAGTGAC
CCCATTATCTTGTAACAAATGGCATTACCTAACGCCTGCCACAGTGTTAG
TCAGATGGCAGATACTTCAGCTGGTCCACAAGAACCTAAGATTTCCAGTT
GTCAGTTCTTAGGTGGGTTGTTGGTTCTCAGATGGACTCCACAGTGTGCT
GGTAGGACCAATATAGAATCAGCCATCTTTGCAGTTAACAATGTATTCTC
AGAGCTAGCCATCCCCATGACTTTGTGGAAACTTCTTTCCTGGCCCTTTT
TCAATATGTCAAAGTAGGATTTTTATTTCCTAGAGAACAAAACAGAGATG
TGGTATTGAGCTGTTGTAATAATGAGCCTTACCAGTACTTGCCATAATTC
CACCCTGCATTATCTCAAGATATGATCCTTAAAGACTGGCCAAATGTTCC
CTCGCATATTAATCTCGGTTGGTTCTCCTTTACGTTCCGCTGCTTTTTCC
CCCCCCCTTCTTGGGGCTTTTTTAATCTCTTTGTTAAGGACAATTTAATC
CCTTCTCTTTTCCTTTTTTTTTCATCCCTTTCCTTGTACTCTTGTCACAA
TTTTCTTTACATCTGCCCCCCACTTCTACTTTATTGAACTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_j15.g1 MSMg01no356_j15.g1 CHROMAT_FILE:
MSMg01no356_j15.g1 PHD_FILE: MSMg01no356_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:22 2005
         (414 letters)



>mm_chr17_36251395_36252208
          Length = 814

 Score =  739 bits (382), Expect = 0.0
 Identities = 406/414 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagagatccacctgcctctgtctgtcaggtgttgggattaaaggtgtgtgccaccaaca 60
           |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 201 tcagagatccacctgcctctgtctgtcaggtgctggcattaaaggtgtgtgccaccaaca 260

                                                                       
Query: 61  tccatcaagaaacattaattttatagacataacacattttgagttgtaaagagacctgat 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 261 tccatcaagaaacattaattttatagacataacacattttgagttttaaagagacatgat 320

                                                                       
Query: 121 tgtagggtgagtgaccccattatcttgtaacaaatggcattacctaacgcctgccacagt 180
           ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 tgtagggcgagtgaccccattatcttgtaacaaatggcattgcctaacgcctgccacagt 380

                                                                       
Query: 181 gttagtcagatggcagatacttcagctggtccacaagaacctaagatttccagttgtcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttagtcagatggcagatacttcagctggtccacaagaacctaagatttccagttgtcag 440

                                                                       
Query: 241 ttcttaggtgggttgttggttctcagatggactccacagtgtgctggtaggaccaatata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcttaggtgggttgttggttctcagatggactccacagtgtgctggtaggaccaatata 500

                                                                       
Query: 301 gaatcagccatctttgcagttaacaatgtattctcagagctagccatccccatgactttg 360
           ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaatcagccgtctttgcaggtaacaatgtattctcagagctagccatccccatgactttg 560

                                                                 
Query: 361 tggaaacttctttcctggccctttttcaatatgtcaaagtaggatttttatttc 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggaaacttctttcctggccctttttcaatatgtcaaagtaggatttttatttc 614


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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