BAC Information

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BAC

Clone NameMSMg01-357O08
Chromosome17 (Build37)
Map Location 32,085,774 - 32,281,768
singlet/doubletdoublet
Overlap geneHsf2bp, Rrp1b, LOC435518, Notch3, Pdxk-ps
Upstream geneUmodl1, Abcg1, Tff3, Tff2, LOC100042904, Tff1, Tmprss3, Ubash3a, LOC100042906, Tsga2, EG667056, Slc37a1, Pde9a, Wdr4, 1500032D16Rik, Pknox1, Cbs, LOC623242, U2af1, Cryaa, Snf1lk
Downstream geneAbhd9, Brd4, LOC100043434, LOC100043433, Akap8, Akap8l, Wiz, A430107D22Rik, Pglyrp2, 4732474A20Rik, EG208285, Cyp4f16, LOC667178, LOC677156, EG631304, Cyp4f15, LOC623809, 9030612M13Rik, Zfp811, 6030490I01Rik, LOC631266, BC066107, Cyp4f14, Cyp4f13, 6030422M01Rik, Zfp472, C920016K16Rik, 1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357O08.T7 (MSMg01no357_o08.b1)MSMg01-357O08.TJ (MSMg01no357_o08.g1)
ACCAG467683AG467684
length769765
length of high quality
(start - end)		218 (84 - 301)403 (77 - 479)
definitionCHROMAT_FILE: MSMg01no357_o08.b1 PHD_FILE: MSMg01no357_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:01 2005CHROMAT_FILE: MSMg01no357_o08.g1 PHD_FILE: MSMg01no357_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,281,551 - 32,281,768)(32,085,774 - 32,086,176)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTTCTTGCCTCNTACAGTGTCCAGCTGGCTATGCTGGTGACAGTT
GTGAGGATAATATAGATGAGTGTGCTTCCCAGCCCTGCCAGAACGGAGGC
TCCTGTATCGATCTTGTGGCCCGCTATCTCTGTTCCTGTCCCCCTGGCAC
ACTGGGTATGTTAAGGCCAGGGTTGGGGGCAGGATAAGAGGATGAGTTTC
TAGCCTCCACTGACCATGCTCCTATACCCTAGGAGTTCTCTGTGAGATCA
ATGAGGACGATTGTGTTCCTTGCCCATCCTTGGACTCACGCGTTCAGCGC
CTACACAATGGCTCCTGTGCGGACCTGCTGGATGTCTTCCGCTGCAACTG
TCCTCCAGTACACACTGGTCTGCACTGTGAGGTATATCTCTTCGCATCGT
CCTCGTTCCCTCATTCTCTTTTTCCCTACTTCCCCATTTGTCTTTCACTT
CTAACCTGCCCCCTTCATGTTTTATTCGCTCCCTCTGCTTTACCCTCCTT
TTATTTTCACCTTATCCCCCTCCCCTAACCCTGATTCTCATCTCCTCCTC
CCCCTTTTTTCCTCTTCTTCCCCCTCTCCCTTTACTTCTTTTCCTTTTTT
TTTTTTACCCCTTTTTTTTTCTTTTCACGCTCCTTCTCCTTCCTTTTTAT
TCCACCCTCTCATCCTTCTTCCCTTCCCCCCCCTCCCTTTTACCTCATTC
TATTATTTTCCCTTCTTGT

CGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGATAGCCAAAGACACACAGTG
ACTTTCTTGTCTCAAAGACCACCAAATGAACAACAAAAAGATAAATAAGT
AAAATCAATTCAGGAGGAAAATGAAAAAAATCAAAAGTTGGCCCTTTGAA
AAATAATTCCTAAAACTAGTCAAGACTAGCAGAAAGGAGGGAAAGTCAGA
AATGAGAAATATCAAGAGCAAGACAGTGGCTTTAACTACAAACCCTACAG
AAAATTAAGAATAAGAAGGGATAGGAACAATTTTGTGTCCATAATTTTAA
AACTTGGATGAATGAACATTCAAAGTTCCCTGTGTTTTTTCTTTAGGTTG
AATATCCTAAATTATTCCTACATCTACTAAGAAAATTGAATTTGAAGTTA
ATAGGAAATGTTTAAACAATGAGTAAGAAGAACCCAGACCCTGATGGCTT
CATTTACAGAAGACACAGCAACCCTATATAAGACTTCCAAAGAGGGGCTG
GGGATTCAGCCCAGTCGTACAGTATTTTGTTCCCTTTGCACAATGTCCGT
GTCCCCTCTACATCTGCGCGAAAACAAATTTGTTCGGTTTCGATATTTTT
CGTAGACATTAATTCGTTTAACTTTTATCGCACGCGCCTGCGCTTTGATT
TTCCCTTCTCGTGCTCTTTTCCGTCGCTCCCCGTATTATCCACTTTCTTT
GCTCGTTTTTATTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_o08.b1 MSMg01no357_o08.b1 CHROMAT_FILE:
MSMg01no357_o08.b1 PHD_FILE: MSMg01no357_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:01 2005
         (218 letters)



>mm_chr17_32281351_32281968
          Length = 618

 Score =  422 bits (218), Expect = e-122
 Identities = 218/218 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatgctggtgacagttgtgaggataatatagatgagtgtgcttcccagccctgccagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ctatgctggtgacagttgtgaggataatatagatgagtgtgcttcccagccctgccagaa 359

                                                                       
Query: 61  cggaggctcctgtatcgatcttgtggcccgctatctctgttcctgtccccctggcacact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 cggaggctcctgtatcgatcttgtggcccgctatctctgttcctgtccccctggcacact 299

                                                                       
Query: 121 gggtatgttaaggccagggttgggggcaggataagaggatgagtttctagcctccactga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gggtatgttaaggccagggttgggggcaggataagaggatgagtttctagcctccactga 239

                                                 
Query: 181 ccatgctcctataccctaggagttctctgtgagatcaa 218
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 ccatgctcctataccctaggagttctctgtgagatcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 618
Length adjustment: 9
Effective length of query: 209
Effective length of database: 609
Effective search space:   127281
Effective search space used:   127281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no357_o08.g1 MSMg01no357_o08.g1 CHROMAT_FILE:
MSMg01no357_o08.g1 PHD_FILE: MSMg01no357_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:01 2005
         (403 letters)



>mm_chr17_32085574_32086376
          Length = 803

 Score =  756 bits (391), Expect = 0.0
 Identities = 400/403 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggatagccaaagacacacagtgactttcttgtctcaaagaccaccaaatgaacaacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggatagccaaagacacacagtgactttcttgtctcaaagaccaccaaatgaacaacaa 260

                                                                       
Query: 61  aaagataaataagtaaaatcaattcaggaggaaaatgaaaaaaatcaaaagttggccctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagataaataagtaaaatcaattcaggaggaaaatgaaaaaaatcaaaagttggccctt 320

                                                                       
Query: 121 tgaaaaataattcctaaaactagtcaagactagcagaaaggagggaaagtcagaaatgag 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 tgaaaaataattcctaaaactagtcaagactagcagaaaggaaggaaagtcagaaatgag 380

                                                                       
Query: 181 aaatatcaagagcaagacagtggctttaactacaaaccctacagaaaattaagaataaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 aaatatcaagagcaagacagtggctttaactacaaaccctacagaaagttaagaataaga 440

                                                                       
Query: 241 agggataggaacaattttgtgtccataattttaaaacttggatgaatgaacattcaaagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agggataggaacaattttgtgtccataattttaaaacttggatgaatgaacattcaaagt 500

                                                                       
Query: 301 tccctgtgttttttctttaggttgaatatcctaaattattcctacatctactaagaaaat 360
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 tccctgtgttttttctttaggttgaataacctaaattattcctacatctactaagaaaat 560

                                                      
Query: 361 tgaatttgaagttaataggaaatgtttaaacaatgagtaagaa 403
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaatttgaagttaataggaaatgtttaaacaatgagtaagaa 603


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space:   312836
Effective search space used:   312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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