BAC Information

Click to search

BAC

Clone NameMSMg01-358P07
Chromosome17 (Build37)
Map Location 37,620,173 - 37,620,663
singlet/doubletsinglet
Overlap geneH2-M2
Upstream geneH2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109
Downstream geneOlfr110, Olfr111, Olfr112, Olfr113, Olfr114, Olfr115, Olfr116, Olfr117, Olfr118, Olfr119, Scocp, Olfr120, Olfr1558-ps1, Olfr121, Olfr122, Olfr123, Olfr124, Olfr125, LOC672822, Olfr126, Olfr127, Olfr128, Ppia-ps17_697.1, Olfr761, Olfr1552-ps1, LOC100043265, Olfr129, Olfr130, Olfr131, Olfr132, Olfr133, Olfr134, Olfr135, Olfr138, Olfr137, Olfr762-ps1, Olfr136, LOC626985
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358P07.T7 (MSMg01no358_p07.b1)MSMg01-358P07.TJ (MSMg01no358_p07.g1)
ACCAG468487AG468488
length728722
length of high quality
(start - end)		492 (33 - 524)411 (60 - 470)
definitionCHROMAT_FILE: MSMg01no358_p07.b1 PHD_FILE: MSMg01no358_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:21 2005CHROMAT_FILE: MSMg01no358_p07.g1 PHD_FILE: MSMg01no358_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTCACAAT
TCTCGAGTTTCCCTTCTTTTGTAAGCCAAATAAAGATCTTCTGCATGGAC
ACTGATGACTATGCTCCAATTCTCATTCCTACTGGCTATGAGGTTCCTAG
AGAACTGCTGTTGAAGTTCCTCATTATATAGTCACCAAGGACCAACAGAG
ACAGACTCGCTCCAAATCCAGAGAATGGAGACTTCAGCATTCTTCACTCT
CCTCTTCACTCTCTACCTGCTGCTTGGGGCTTCCCTTGCCCTGGCACAGA
CCTTTATAGGTGAGTGCAGGTCTTGAAAAACAGGTCTTTTACAAGAAGAG
CACCTGGGAATCCCACCCAGCCAGACCTTTCCAGCAGGGCTACCCACATC
CCCCACTCCCTTAAACCCTGCACCTCCTGCTTCCCTTCTACCACCTGCCC
TGGATCCCCATGAGGGAAGGTTCAAGCCAAACATCAGCCTTTTGCTTCCT
TCAGGATCCCACTCCTTGCGGTATTTTTTAATCGCAGTGTCAAGAACTGT
GCTATAGGAGACCCACTACTTGATTGTTGGCTATGTTGTATGACACAGAG
CTTGTGCTCTTTTGACTATGACGGCCGAAAATCCCGAGGTTTTGAGCCCC
TTATTGTNCTTGTATGGGATATGAATTGCCCATGATGATACTGGGGTTTG
ACCACGACTCCGTTTTTTTTCTAACGTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXATACAGGAGAGAAACCTTACAAATGCAGTGAGTGTGACAAA
TGCTTTACTGACAAAGGCTATTTGAGAGTTCATCATAGAATTCATTCAGG
AGAGAAACCTTACAAATGTAGTGAATGCGACAAATGCTTTACTGACAAAG
GCTATCTGAGAGTTCATCATAGAATTCATGCAGGAGAGAAACCTTATAAA
TGCAGTGAATGTGACAAATGCTTTACCCAAAAACCACATCTTAGTATTCA
TCAGAGAATTCATACAGGAGAGAAACCGTACAAATGCAGTGAATGTGACA
AATGCTTTACCCGAAAATCACATCTTAGTATTCATCAGAGAATTCATACA
GGAGAGAAACCGTACAAATGCAGTGAATGTGACAAATGCTTTACCCAACA
ATGCCATCTTAGTATTCATCAGAGAATTCATACTGGAGAGAAACCTTACT
TATGCAGTGAATGCGACAAATGCTTTACTCAAACATGCCATCTTTATATT
CATCAAATAATTCATTCTGGACAGAAACCTTATATATGTCCTGAATGTGA
CATATGCTTTACTTGAAAATCTCTCCTTAGTATTCACCCGAGAATTTCTT
ACCGGAATATAAACCTTTACAATTGGCCGTGAATGGGGTTAAATGGCTTT
TATTGACTAACTTCTTTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_p07.b1 MSMg01no358_p07.b1 CHROMAT_FILE:
MSMg01no358_p07.b1 PHD_FILE: MSMg01no358_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:21 2005
         (492 letters)



>mm_chr17_37619970_37620864
          Length = 895

 Score =  895 bits (463), Expect = 0.0
 Identities = 483/491 (98%), Gaps = 3/491 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctcacaattctcgagtttcccttcttttgtaagccaaataaagatcttctgca 63
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 ggaattcctcacaatcctggagtttcccttcttttgtaagccaaataaagatcttctgca 635

                                                                       
Query: 64  tggacactgatgactatgctccaattctcattcctactggctatgaggttcctagagaac 123
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 634 tggacactgatgactatgctccaattctcattcctactggctatgatgttcctagagaac 575

                                                                       
Query: 124 tgctgttgaagttcctcattatatagtcaccaaggaccaacagagacagactcgctccaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 tgctgttgaagttcctcattatatagtcaccaaggaccaacagagacagactcgctccaa 515

                                                                       
Query: 184 atccagagaatggagacttcagcattcttcactctcctcttcactctctacctgctgctt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 atccagagaatggagacttcagcattcttcactctcctcttcactctctacctgctgctt 455

                                                                       
Query: 244 ggggcttcccttgccctggcacagacctttataggtgagtgcaggtcttgaaaaacaggt 303
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 454 ggggcttcccttgccctggcacagacctttaaaggtgagtgcaggtcttgaaaaacaggt 395

                                                                       
Query: 304 cttttacaagaagagcacctgggaatcccacccagccagacctttccagcagggctaccc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 cttttacaagaagagcacctgggaatcccacccagccagacctttccagcagggctaccc 335

                                                                       
Query: 364 acatcccccactcccttaaaccctgcacctcctgcttcccttctaccacctgccctggat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 acatcccccactcccttaaaccctgcacctcctgcttcccttctaccacctgccctggat 275

                                                                       
Query: 424 ccccatgagg---gaaggttcaagccaaacatcagccttttgcttccttcaggatcccac 480
           ||||||||||   ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 274 ccccatgagggaagaaggttcaagccaaacatcagccttttgcttcctccaggatcccac 215

                      
Query: 481 tccttgcggta 491
           |||||||||||
Sbjct: 214 tccttgcggta 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 895
Length adjustment: 10
Effective length of query: 482
Effective length of database: 885
Effective search space:   426570
Effective search space used:   426570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |