BAC Information

Click to search

BAC

Clone NameMSMg01-358P09
Chromosome17 (Build37)
Map Location 58,760,197 - 58,760,723
singlet/doubletsinglet
Overlap genenone
Upstream geneCntnap5c, LOC674419, LOC620408, EG545216
Downstream geneLOC668648, 2610034M16Rik, Nudt12, 4930505H01Rik, LOC100043537
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358P09.T7 (MSMg01no358_p09.b1)MSMg01-358P09.TJ (MSMg01no358_p09.g1)
ACCAG468491AG468492
length714709
length of high quality
(start - end)
350 (59 - 408)527 (64 - 590)
definitionCHROMAT_FILE: MSMg01no358_p09.b1 PHD_FILE: MSMg01no358_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:21 2005CHROMAT_FILE: MSMg01no358_p09.g1 PHD_FILE: MSMg01no358_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAACT
GATGCCCATTGAATGGCTAAGAAACAACTAAAGAAATGTTCAACATCCGT
AATCATCAGGGAAATGAAAATCAAAACAACCCTGAGATTCAACCTCACAC
CATTTAGAATGGCTAAGATGAAACCTCAGAAGACAGCAGATGCTGGCATG
GATGTGGAGAAAGAGGAACACTTCTCCACTGTTGGTGGGCTTGTAAACTG
GTACAACACCTCTGAAAATCAGTTTGTTGGTTCCTCAGAAAATAGGATAT
AGTACTACCTGATGATACAGCTGTACCACTCCTGGGCATATACCCAAAAT
ATGCTCCAACATATAATAAAGACACATGCTCCCTTATGTTCACAGCAGCC
TTATTTACAACAGCCAGAAGCTGGAAATAAGCCAAATGTCCATCAACAAA
GAATGGATACAGAAAATGTAGTACATTTACTCAATGGAGTACTACTCAGC
TATTAAAAACAATGACTTCTTGAAATTCTTAGGAAAATGGATGGAACTAG
AAAGTATGATCCTGACTGAGGCAACCCAATTCACTAAAGAAAACACATAG
TATGTACTTACTGATAAGTGGATATTATCCCAAAACCTCAGAATACCCAT
GATACTATTTTACTGACCACATGAACTCTAGCATAAAAGACCCGTACAAG
TGTGGATGCCTTAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCCTATGCCAAAAGCAAGTTTTTCCATTTGAAAGCAA
GTACCCTAGGGACATATAATTGAAAAGTTAATGTCACTTATTCATAAGGT
CACTGAACATGTCATAAATGTGATTTATGCCTACAGTTCAGCCAAGAGTC
TCGTGGACAGTACATTTCACCATCACAGGCAGGCACAAATGGCATCTCCT
ACACAACTGCCCCGTCACCTCAGAGCTCTAAAGTCAGTGTCAGATTTTAA
GAGAATCTGAACTTCCATGGTGAAGCAAGAGAGAGGGTGAAAACTAAGCA
ATCTACTGTATCTGTGTGAGAGTGCTTTTATTTCTAAGCCTCAACTTTCT
CCTCTGTAAATTGGCTGCATCCTCAATTCTGCTCAAGTAGTGGGTGTACC
ACACATGGTTGTATTAGATCAGCAATGCAGGTAACAGCAGGCAGAGCAGG
AGGACAGAAAATGGATGAAGGGAAGCTGAGCAGAAGACTTAGTTGGTAAA
GTGATTGCTACAGTGGCATAAGGACTACTTTTATTCCCTAGAATTCAAAT
TAAAAATAAAATTTATTGTAGTGGAGATGCTTATATTCCCAGTGTTGAGG
AAAGGGAGACAGAATTGTCCTGAGGTTCTCTGGTCAATCAATCTAGCATA
ATTGGAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_p09.g1 MSMg01no358_p09.g1 CHROMAT_FILE:
MSMg01no358_p09.g1 PHD_FILE: MSMg01no358_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:21 2005
         (527 letters)



>mm_chr17_58759997_58760923
          Length = 927

 Score =  988 bits (511), Expect = 0.0
 Identities = 523/527 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctatgccaaaagcaagtttttccatttgaaagcaagtaccctagggacatataattga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 tcctatgccaaaagcaagtttttccatttgaaagcaagtaccctagggacatataattga 668

                                                                       
Query: 61  aaagttaatgtcacttattcataaggtcactgaacatgtcataaatgtgatttatgccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 aaagttaatgtcacttattcataaggtcactgaacatgtcataaatgtgatttatgccta 608

                                                                       
Query: 121 cagttcagccaagagtctcgtggacagtacatttcaccatcacaggcaggcacaaatggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 cagttcagccaagagtctcgtggacagtacatttcaccatcacaggcaggcacaaatggc 548

                                                                       
Query: 181 atctcctacacaactgccccgtcacctcagagctctaaagtcagtgtcagattttaagag 240
           |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 547 atctcctacataactgccccatcacctcagagctctaaagtcagtgtcagattttaagag 488

                                                                       
Query: 241 aatctgaacttccatggtgaagcaagagagagggtgaaaactaagcaatctactgtatct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 aatctgaacttccatggtgaagcaagagagagggtgaaaactaagcaatctactgtatct 428

                                                                       
Query: 301 gtgtgagagtgcttttatttctaagcctcaactttctcctctgtaaattggctgcatcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gtgtgagagtgcttttatttctaagcctcaactttctcctctgtaaattggctgcatcct 368

                                                                       
Query: 361 caattctgctcaagtagtgggtgtaccacacatggttgtattagatcagcaatgcaggta 420
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 367 caattctgctcaagtagtgggtgtaccacacatggttgtattagatcagccatgcaggta 308

                                                                       
Query: 421 acagcaggcagagcaggaggacagaaaatggatgaagggaagctgagcagaagacttagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 307 acagcaggcagagcaggaggacagaaaatggatgaagggaagctgagcagaaggcttagt 248

                                                          
Query: 481 tggtaaagtgattgctacagtggcataaggactacttttattcccta 527
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tggtaaagtgattgctacagtggcataaggactacttttattcccta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)