GGGAGCCGGGCGGGCCGCGCAGGCGGCCGGCGGGACACGCAGGCGGGGGG
GGCGGGCGCCAGGCACGACGCGCAGCCCCGGGGGCGGGCGCGGGCGGCTT
TTTTTTNNNNNTTTNTTTTTTTTTTTTTTTTTTTNNNNNNNNNTNNNNTN
NTTNNTNTTTTTNNNTTTTTTTNNNNTTTTTNNTTTTTTNNNTTTTTTTT
NTTTTTTTTTTNNNTNNNTTTTTTTTTTTTTTTTTTTNNNTTTNTTTTTT
TTTTTNTTTTTTTTTTTTTTNNNNNTTTTTTTTTTTTTTTTTTTTTTNNT
TNTTNTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTTTTNNNTTTT
TNTTTTTTTTTTTNNNNNTTNTNTTTTTTTNTTNTTTTTTTTTTTTTNTT
TTNNTTTTTTNTTTTTTNTTTTNTTTTTTTTTTNNTTTTTTTTTTTTNNT
TTTTTTTNNTTTTTTTNNTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTNTNNTTTTTTTTTTTTTTTTTTTTTTNNNTTTTTTGGTT
TTGGNTTTNTTGGTTTGTNTTGTTTTTTTNTTTTTTTTTTTTTTTTTTGT
NNNNTGTTTTTTTTTCTTTTTTTTTTGTTTNNTTTTTTTTTTCTTTTTNT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTGTTTTGTTNCNTTNTT
TTTTAGACGCGCGGGGGCGCGCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTGTTTCACAGTTCAAGGTCCCATTGTGATACCCAAGCATAA
ACACCCAGCAGTAGAAGGTTCTGGAATAAAGTAAGAGTAGAATACTGTGC
CTGGAAACAGATGCCCCATGGGCCAGTCCTGGAAAAATCAAAAGGATCTG
AGAGGGGAAGATACAAGTGAGATGACTAAAATATAAAACAAAAGCCTTCA
TAGTCCTGTGTAAAGGTAATCAAGACTGAAAAAAAATGAATACGTTAAAA
ATGAAAAACTAGTAGCCATTTTTATTTGATCCAGTGTGGGCTATGAAGGT
TAACAATTAACAGATGTTGGCCGTTAGCATGCCTATGTCAAGGAACTTTC
ATGTCTTTCCATCAGGAATTCTTCTGCAATCTTTTTATGGAGAGTCTTAT
ATTTATTAATTTCCTTAAATTAAGACTGGACTCAATGATATTCAAGTATT
ATAGAATCTTCACCTTCAAATCAACTACTCCTCTTAATAACATCTTATTT
CCTATTATATTACTGCACCTTTTTTTCTTTTCCAATTCTCTTCCTACCTT
TTGTTTATTTTTCCTCTTGATCCCGTCTCTTAATCATCCCTTATTTAACT
CCCTTTCTCTCTAATCTCTCTTCTCGCTCTTACGCACTTTTATTTTTTTT
TTCCCCTCTCTTTTTTTCCCTTCTCCCTCCCCTTCTTTTTTCTCCTTCCT
CN

Query= MSMg01no359_n04.g1 MSMg01no359_n04.g1 CHROMAT_FILE:
MSMg01no359_n04.g1 PHD_FILE: MSMg01no359_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:24 2005
         (379 letters)



>mm_chr17_75663525_75664304
          Length = 780

 Score =  688 bits (356), Expect = 0.0
 Identities = 374/380 (98%), Gaps = 1/380 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtttcacagttcaaggtcccattgtgatacccaagcataaacacccagcagtagaaggt 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 580 tgtttcacagttcaaggtcccattgtgatacccaagcataaacatccagcagtagaaggt 521

                                                                       
Query: 61  tctggaataaagtaagagtagaatactgtgcctggaaacagatgccccatgggccagtcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tctggaataaagtaagagtagaatactgtgcctggaaacagatgccccatgggccagtcc 461

                                                                       
Query: 121 tggaaaaatcaaaaggatctgagaggggaagatacaagtgagatgactaaaatataaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tggaaaaatcaaaaggatctgagaggggaagatacaagtgagatgactaaaatataaaac 401

                                                                       
Query: 181 aaaagccttcatagtcctgtgtaaaggtaatcaagactg-aaaaaaaatgaatacgttaa 239
           ||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 400 aaaagccttcatagtcctgtgtaaaggtaatcaagactgaaaaaaaaaagaatatgttaa 341

                                                                       
Query: 240 aaatgaaaaactagtagccatttttatttgatccagtgtgggctatgaaggttaacaatt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 aaatgaaaaactagtagccatttttatttgatccagtgtgggctatgaaggttaacaatt 281

                                                                       
Query: 300 aacagatgttggccgttagcatgcctatgtcaaggaactttcatgtctttccatcaggaa 359
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 280 aacagatgttggccgttagcgtgcctatgtcaaggaactttcatgtctttccatcacgaa 221

                               
Query: 360 ttcttctgcaatctttttat 379
           ||||||||||||||||||||
Sbjct: 220 ttcttctgcaatctttttat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 780
Length adjustment: 9
Effective length of query: 370
Effective length of database: 771
Effective search space:   285270
Effective search space used:   285270
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)