BAC Information

Click to search

BAC

Clone NameMSMg01-359P19
Chromosome17 (Build37)
Map Location 50,626,562 - 50,626,873
singlet/doubletsinglet
Overlap genenone
Upstream geneDaam2, Kif6, EG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl
Downstream genePlcl2, EG654432, Tbc1d5, LOC100043451, LOC100043452
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359P19.T7 (MSMg01no359_p19.b1)MSMg01-359P19.TJ (MSMg01no359_p19.g1)
ACCAG469271AG469272
length782859
length of high quality
(start - end)
381 (16 - 396)213 (52 - 264)
definitionCHROMAT_FILE: MSMg01no359_p19.b1 PHD_FILE: MSMg01no359_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:36 2005CHROMAT_FILE: MSMg01no359_p19.g1 PHD_FILE: MSMg01no359_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGACTCACTATATCGAGAGGATCCGCGGAATTCTCATCGATGGCCAGTCA
TGAGGATTGATTCTCTGGGAACTTGACTTTGAGATAGAGATAGATGTATG
AAGGTGTTTGACAAGTGCTTTTGGGGACCATGACTATGACAAGAGAAGAG
AAGAGGATTGGGCAGAGAGCCTTCTGGCTCTGACACAGTCACAGGAGTAT
GCAGGCAGCCCCATGTGGGGCTTGGGAGCTGGGCTGACCCTGAACACTTA
GCCCACACTGGAACAAGCAGGAGGGCCCAGCCTTAAAGGCCCCACTGTCC
AACTATTAGGTGCCTGGCAGAAGACATAAGCATAAGGTGGTTCCCTCTAG
CTCAGGAGAGCTGAGAGTCATTGGATAACATTCCCAGCAGCTGACAGAAT
AGACCCTTCATTGCTGACAGCACAATGAGTTATACATGACAGTTTGGATT
CCACTTCAGCTTTCACATGCTATGTTTTGTAAAAAGACTGCATGCTGTTC
TTCACATTACTCTTTTTATACATGGCTCCGGTGTTTTATTGCTTGTCCCC
GGCCCCACTATCTTTGTTTAGTGTTTTTGCCCGCCTTCTCGCTTTTGGGC
CCCACCCCTGTTTTTTTTTTCCCTTTTACCTTATCCATAGTCTTTTTTTT
ACCNTCTTTTGTTTCCCGTCCCTTTTTTCATTTTGCCCCTCCTTTCTCCA
CTATTCTTATTTCCTCCCTCTTTTTCTTCTCCCTTTATTCTCCGCTGTCT
TCTCTCCCCTTTTCTCCCCGCCCTTTTTTTTG
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XAACTCCCAGCAACAACATGGTGGCTCACAACCATCTATACTGGGATCTG
ATGCCCTCTTCTGGCATGCAGGTGTACATGCAAATAGATCACTCATACAT
TAAGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA
AAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
AAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAAAGAAGGAACCAACTT
TTTTTTTCAATGACCGATCTCTCCCCGTTCTATCTTTTTCTTTTTTCTTC
CCCCTTTTTTTCCCTCGCTTTCCTTCTCTTTTCCGGCCCTTTTATTGCTT
ACCCCTTTTTCCTTTTCCTTTTTTTCGCCTTTATCCTTTTCCCTTCTTCC
CTCTCCCCTTTCTCTTTCTTTCTCCTCTCCCCCCCCTATTTCCCTTCTTT
TCTTCCTTTCTCCCCTTTTCTCGCACTCCTCTCTTTCTTTCCCCTTTTTA
TATTTTTACTCCATATTTTTTCCCCCCTTCTATTTCTTTTCCCCTTCTTT
TTTTTCGTCCCCTTATACCCCTTCCTTTATTTTATATTCCACCCCCTTAT
CAGTATCTATCCTTATCCTTTATTATTTCCCCTTCCACCTCTATATATCT
ATCACATTCCACTATTCTCACCCCTTCCGCCACCTCTCTACCTATTTATT
TCTATTTATCACCCTCTCCCTTATTCTTCTTTTTATTCCTGTATGCCTAT
CCCAGTCCTGTGTTCCGTTCATCCCTTTCTCTTTTCTCTTTATTGTTTTC
TCCGCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_p19.b1 MSMg01no359_p19.b1 CHROMAT_FILE:
MSMg01no359_p19.b1 PHD_FILE: MSMg01no359_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:36 2005
         (381 letters)



>mm_chr17_50626093_50626873
          Length = 781

 Score =  588 bits (304), Expect = e-172
 Identities = 310/312 (99%)
 Strand = Plus / Minus

                                                                       
Query: 68  gatagagatagatgtatgaaggtgtttgacaagtgcttttggggaccatgactatgacaa 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gatagagatagatgtatgaaggtgtttgacaagtgcttttggggaccatgactatgacaa 722

                                                                       
Query: 128 gagaagagaagaggattgggcagagagccttctggctctgacacagtcacaggagtatgc 187
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 721 gagaagagaagaggattgggcagagagccctctggctctgacacagtcacaggagtatgc 662

                                                                       
Query: 188 aggcagccccatgtggggcttgggagctgggctgaccctgaacacttagcccacactgga 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aggcagccccatgtggggcttgggagctgggctgaccctgaacacttagcccacactgga 602

                                                                       
Query: 248 acaagcaggagggcccagccttaaaggccccactgtccaactattaggtgcctggcagaa 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 acaagcaggagggcccagccttaaaggccccactgtccaactattaggtgcctggcagaa 542

                                                                       
Query: 308 gacataagcataaggtggttccctctagctcaggagagctgagagtcattggataacatt 367
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 541 gacataagcataaggtggttccctctagctcaggagagctgagagccattggataacatt 482

                       
Query: 368 cccagcagctga 379
           ||||||||||||
Sbjct: 481 cccagcagctga 470


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)