Query= MSMg01no360_d16.b1 MSMg01no360_d16.b1 CHROMAT_FILE:
MSMg01no360_d16.b1 PHD_FILE: MSMg01no360_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:55 2005
(527 letters)
>mm_chr17_75783719_75784645
Length = 927
Score = 948 bits (490), Expect = 0.0
Identities = 515/524 (98%), Gaps = 4/524 (0%)
Strand = Plus / Plus
Query: 5 gaattccacagtgttccacagtgagatgagcagctgctggattcaagctgggagtttcca 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacagtgttcgacagtgagatgagcagctgctggattcaagctgggagtttcca 264
Query: 65 gatgctgttagatcatgttaggaacattggcgatccatttgtcctgttcctacagacatg 124
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 265 gatgctgttagatcatgttaggaacgttggcgatccatttgtcctgttcctacagacatg 324
Query: 125 tgctttgcacttacaacacggactattttttccttatatcttttttatgataatacatat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgctttgcacttacaacacggactattttttccttatatcttttttatgataatacatat 384
Query: 185 tagggttggataaagcaactcctccaggaggcctgatgtattccaagaaggcttgtcccc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagggttggataaagcaactcctccaggaggcctgatgtattccaagaaggcttgtcccc 444
Query: 245 ccacctctgtgtatgtgtgtgtgtgtgtgtgttctagaatttgcaaatggttttgcaagt 304
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 445 ccacctctgtgtatgtgtgtgtgtgtgtgt--tctagaatttgcaaatggttttgcaaat 502
Query: 305 catcagctcctttaagtcattgtttattctttatgttctatcccagtatttagtgtgtgc 364
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 503 catcagctcctttaagtcattgtttattctttatgctctatcccagtatttagtgtgtgc 562
Query: 365 atgagcccatctcccatagagggaagcccaggcacactggagatgctgctgaatggtgtc 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 atgagcccatctcccatagagggaagcccaggcacactggagatgctgctgaatggtgtg 622
Query: 425 tgtcatgcccagatcactgctctgagatgtgt-gcgtgtctaaggtcacccaacagtgtc 483
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 623 tgtcatgcccagatcactgctctgagatgtgtag-gtgtctaaggtcacccaacagtgtc 681
Query: 484 ctttccctctcagatgactatgcccagctgtgcaatatccctgt 527
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ctttccctctcagatgactatgcccagctgtgcaatatccctgt 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space: 474089
Effective search space used: 474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_d16.g1 MSMg01no360_d16.g1 CHROMAT_FILE:
MSMg01no360_d16.g1 PHD_FILE: MSMg01no360_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:55 2005
(430 letters)
>mm_chr17_75955382_75956211
Length = 830
Score = 808 bits (418), Expect = 0.0
Identities = 427/430 (99%)
Strand = Plus / Minus
Query: 1 ctcctgtgtggagcattgacgttgcgcacagccttggggacagagtagaaagtgaactga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ctcctgtgtggagcattgacgttgcgcacagccttggggacagagtagaaagtgaactga 508
Query: 61 gcggtacagtggcataccagtagacagaagaacacactggagctgcccatgccaacatga 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gcggtacagcggcataccagtagacagaagaacacactggagctgcccatgccaacatga 448
Query: 121 ggaggacacttctgttggtagaggaaaacaaactaagttgtcttagtcttggagactgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ggaggacacttctgttggtagaggaaaacaaactaagttgtcttagtcttggagactgag 388
Query: 181 caagaagcatctgtcaggcagggaagaaggaagaggattccagtcagaggaaacaatctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 caagaagcatctgtcaggcagggaagaaggaagaggattccagtcagaggaaacaatctg 328
Query: 241 atatgaaagtatagctgtggttggcagcagctatcaggtaaaccaagaaacaaggtaggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 atatgaaagtatagctgtggttggcagcagctatcaggtaaaccaagaaacaaggtaggt 268
Query: 301 acatcatcccttaaaagtcttccagtttacctcactctaactttcaaaagcatcactgat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 acatcatcccttaaaagtcttccagtttacctcactctaactttcaaaagcatcactgat 208
Query: 361 tttcttctgtgagtgtgtgtgcgtgtgtgtgtgtgcgtgtgtgtgtgtgtttgtgtgtgt 420
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 207 tttcttctgtgagtgtgtgtgcgtgtgtgtgtgtgtatgtgtgtgtgtgtttgtgtgtgt 148
Query: 421 gtgtgtgtgt 430
||||||||||
Sbjct: 147 gtgtgtgtgt 138
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space: 345641
Effective search space used: 345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
