CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAGATCCGCGGA
ATTCACTCTTGTACCCGCACATAAGGCTTGTTTACTAGTTAGGCGCAGTG
GAAGCCAGCACCATCTTACAATGGTGATTTCTCACAGCACTGCTCTCCAC
ATGTTATAGTGCTTCACTGTGGTGTCAAATCCTCTACTGTGGTGACATAG
TGCTCCAAGGTAGTATGAACGGGCTCCACTGTGTTGTCACCATGCTCCAC
TGTGATGTCACAGTGGTCTGCACTGGTGTCACAGTGCTCCTCTGTGGTGT
CATAGTGCTCAACTGTGTGTTTCTCGTGCTCCACTGTGGTGTCACAGTTC
TCCACTGTGGAGTCACAGTGCTCCACTGCAGTGTCACTGTGCTCCACTGT
GGTGTCACATTCTCTACTGTGGTATCACTCTGCTCCTCTGTGGTGACAAA
TTGCCCAACTGTGCTGTCACATTGCACCACTGTGATGGCACATTGCTTCT
CTGTGATGTCACAGTGCTCAACTGTGTTGTCACTCTGCTCCTCTGTGGTG
TCACATTGCTCAACTGTGGTGTCACCATTCTCCACTGTGTTGTCACTAAT
CACAATGTGCCGTCATAACGCCTACCCCGTTCTGTTCCACCCCTACAATG
CATTTCTTTTTATTTCCTCCATTTTGTATTCCTATTTTCCCCTCATGTCT
TTTTATTTACCTGTTTTACCCCTTGTTCATTGTTTCTATACCGTCTCTTA
CTTTTTCTCC

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCCCAATATTATTGTGTGAGGTGCAAT
ATGTGCTTTGAGCTCTACTATAGTTTTTTTTTAATGAATGTGGATGCCCT
TGAATTTGGAGCATGGATATTCAGAATTGAGAGTTCATCTTGGTAGATTT
TATCTTTGGTGAATATGAAGTGCCTCTCCTTGTCTTTTTTTTTTTTTTTA
ACTTTGGGCTGAAAGTAAATTTGATTTGATATTAGAATGGCTACTCCAGC
TTCTTTCTTCAGACCATTTGCTTGGAAAATTGTTTTCCAGTCTTTTACTG
TGACTTAGTGTTTGACTTTTTCCCTGAGATGGGTTTCCTGTAAGCAGCCA
AATGTTGGGTCCTGTTTATGTAGCCAGTCTGTTAGTCTATGTCTTTTTAT
TTGGGAATTGATTCCATTGATATTAAGAGATATTAAGGAAAAGTAATTGT
TGCTTCCTGCTTTTTTGTTTGTTTGGTTGGTTGTTTGCCTGTTTTTAAAA
CAGCATTTTTGTTTTTCTCCATGCCTTCTATTTTCTTTTTCCTTTACCAT
TTTTTTCTTTTTTTTCCTTTTTCCCTCCTATTACTTTTACTCTCGGTTTG
GCGCGGGGNCGGCGTTTCGTTGNGGCGGGGGTTTTTCGTTCCCGGTTCCT
TCCCTTTTTTCCCTTCTCCTTCTCTCTTTTTCCTTCATTATCTCTCTTTT
CG

Query= MSMg01no360_f10.b1 MSMg01no360_f10.b1 CHROMAT_FILE:
MSMg01no360_f10.b1 PHD_FILE: MSMg01no360_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:03 2005
         (439 letters)



>mm_chr17_3020399_3021238
          Length = 840

 Score =  165 bits (85), Expect = 7e-45
 Identities = 272/339 (80%), Gaps = 31/339 (9%)
 Strand = Plus / Plus

                                                                       
Query: 117 tgtggtgacatagtgctccaaggtagtatg-aac-gggctccactgtgttgtcacca-tg 173
           ||||||| || |||||||||  || | ||| ||| | ||||||||||| ||||| || ||
Sbjct: 317 tgtggtgtcacagtgctccactgt-g-atgtaactgtgctccactgtgctgtca-cagtg 373

                                                                       
Query: 174 ctccac---tgtgatgtcacagtggtctgcactg-g-tgtcacagtgctcctctgtggtg 228
            |||||   ||||||   |||||| ||  ||||| | |||||||||||||| ||||| ||
Sbjct: 374 atccactgttgtgat---acagtgttc--cactgtgatgtcacagtgctccactgtgctg 428

                                                                       
Query: 229 tcatagtgctc-aactgtgtgtttctc-gtgctccactgtggtgtcacagttctccactg 286
           ||| || | || || |||| || || | |||||||  |||| ||||||||| ||||||||
Sbjct: 429 tcacagagttctaa-tgtg-gtgtcacagtgctcctttgtgatgtcacagtcctccactg 486

                                                                       
Query: 287 tggagtcacagtgctccactg--cagtgtcactgtgctccactgtggtgtcacatt-ct- 342
           |||||||||||||||||||||  |  |||||||||||||||||||| ||||||| | || 
Sbjct: 487 tggagtcacagtgctccactgttc--tgtcactgtgctccactgtgctgtcacagtgctg 544

                                                                       
Query: 343 ctactgtggtatcactctgctcctctgtggtgacaaattgc-ccaactgtgctgtcacat 401
           | |||||||| |||||||||||| ||||| |  || | ||| ||  |||| |||||||| 
Sbjct: 545 c-actgtggtgtcactctgctccactgtgttttcacactgctcct-ctgtactgtcacag 602

                                                  
Query: 402 tgcaccactgtga-tggcacattgcttctctgtgatgtc 439
           ||| ||||||| | || |||| || ||| ||||||||||
Sbjct: 603 tgctccactgt-agtgtcacagtgattcactgtgatgtc 640



 Score =  114 bits (59), Expect = 1e-29
 Identities = 158/193 (81%), Gaps = 13/193 (6%)
 Strand = Plus / Plus

                                                                       
Query: 152 gctccactgtgttgtcacca-tgctccactgtgatgtcacagtggt--ctgcactggtgt 208
           |||||| |||| || || || |||| ||| ||| |||||||||| |  |||   ||||||
Sbjct: 19  gctccaatgtgatgaca-cagtgctgcacagtggtgtcacagtgcttactg---tggtgt 74

                                                                       
Query: 209 cacagtgctcctctgtggtgtcatagtgctcaactgtg-tgtttctcgtgctccactgtg 267
           |||||| ||||  |||||| ||| ||||||| |||||| |||  || |||||||||||||
Sbjct: 75  cacagtcctccaatgtggtttcagagtgctccactgtgatgtacct-gtgctccactgtg 133

                                                                       
Query: 268 gtgtcacagt-tct-ccactgtggagtcacagtgctccactgcagtgtcactgtgctcca 325
            | ||||||| | | || || ||| |||| ||||||||||||  ||||||||||||||||
Sbjct: 134 ctatcacagtat-tgcc-ctttggtgtcaaagtgctccactgtggtgtcactgtgctcca 191

                        
Query: 326 ctgtggtgtcaca 338
           |||||||||||||
Sbjct: 192 ctgtggtgtcaca 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 439
Length of database: 840
Length adjustment: 9
Effective length of query: 430
Effective length of database: 831
Effective search space:   357330
Effective search space used:   357330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)