BAC Information

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BAC

Clone NameMSMg01-361G08
Chromosome17 (Build37)
Map Location 64,403,737 - 64,591,061
singlet/doubletdoublet
Overlap geneFert2, LOC669778
Upstream geneFbxl17, Ppia-ps17_1026.1, LOC638867, LOC668677, A930002H24Rik
Downstream genePja2, LOC100043582, Man2a1, 4930583I09Rik, LOC100043871
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361G08.T7 (MSMg01no361_g08.b1)MSMg01-361G08.TJ (MSMg01no361_g08.g1)
ACCAG470337AG470338
length798767
length of high quality
(start - end)		174 (50 - 223)537 (81 - 617)
definitionCHROMAT_FILE: MSMg01no361_g08.b1 PHD_FILE: MSMg01no361_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:26 2005CHROMAT_FILE: MSMg01no361_g08.g1 PHD_FILE: MSMg01no361_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,590,891 - 64,591,061)(64,403,737 - 64,404,272)
sequence
NNAATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGTGACGCATGTAACTGGTCATTCCAGAACATTGTGTTCTT
TGATATCTGCAAATAACATCAGAGTGGGGTCACATTGCTTTATGGATTCG
ACATGATATACAACAGTAGACTTTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTATGTGTNNNNNNNTTNNNNNTTTNTTTNNTTT
TTTTTNTTTTNNTTNTNTTNTTTTTTTTTTTTTTTTNTTTTTTTTTTTNT
TTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTNNNNTTATNNTNTTT
TNNTTTTTTTTCTTTTTTTTNNTTTNTTTTTTTCTTTNTTTNTTTTTTCT
TTTNTTNNTTTATCNNCCNNTTTTTCTTTTTTTTTTTTTTTTTTTTTTCC
CCTCTTCCCCTTCCTTTCTCCTCCTCCCTTTTTCCTTTTTCTTTTTTCTT
CTCTTTTCTTTCCCTCCCTTCCCCCTTCTTTCCTTCTTTTCCCCTTTTCT
TTTCCCCCTTTTTTCCCCCCTTCCCCTCTTTTTCTTTCCTCCCCTTTTTT
TTTCTCCTTTTCCCCTCTCTTTCTCCCTTTTCCCCTTTTCCTCTTCTCCC
TTTTTTTTCCCCTTCTCCTTCCCTTTTTTCCTCCCCCCCTTTCTTTCTTT
TCTCCTCTCCCCCCCTTTCCTCTTTTTTTTCTTCTTTCTTTTTTCTTCTC
TCTTTTTCTTTCTTTCCCCTCTTTTTTCCCTTTCTTTTTTTCCTTTCN

TTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTATATTACAAGTATGGTC
CCAGTTCTCCCTGAGAACCCATAAATAATTGGCTCCAAGTTCCCTGAGCA
TAACACATCTACATATACTCAAATCACTTACGCTAGAAGGGTGCAGTGTT
TGTATATCACATATACACAATCTCTTAATTAATTTAAAAATTAAGTTACT
TATAGTACCGTAATATAATGTTGACATAATAGTTATGTAGTATCTTTTAG
AGGCTAATAATAAAGAAATGTCTATACATGCTTAGTACAAATATATATTA
TTAAATATATTTTCAGTCCACAGATGGTTGAATACTAGGATACAGAACCT
TAGATACAAGAGCTAAATAGAATTTGTTTGTTTCATGTACTTTTAGTGTG
GCTCAGAAAATACATTGATGTTTTTATGTAACATTGACAAATTAATAATT
ACCAGATATTCGGTCTATGGTTGCTTTGATTGAGGTTATATTTACATTCA
ATTCTAAAATATATTCTCTGTGTGACCATATTCCATTAATACATTGAATA
TCAGTAAAGCTAGCTTTCAAACTTCACACGTAATTTTGCACTAGTGCCTT
CTCTCTGTTGTAGGTTACCAAGCAGGAAGCTGCCTTTACCTACCCTTTGG
TTTACTCCCCCATAAAGGGGAATCCTCCGCCCTGTCCTTCTTGATCTTGA
CAGGTGAAAAAAAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_g08.b1 MSMg01no361_g08.b1 CHROMAT_FILE:
MSMg01no361_g08.b1 PHD_FILE: MSMg01no361_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:26 2005
         (174 letters)



>mm_chr17_64590738_64591311
          Length = 574

 Score =  315 bits (163), Expect = 8e-91
 Identities = 169/171 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagtgacgcatgtaactggtcattccagaacattgtgttctttgatatctgcaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggaattcagtgacgcatgtaactggtcattccagaacattgtgttctttgatatctgcaa 265

                                                                       
Query: 64  ataacatcagagtggggtcacattgctttatggattcgacatgatatacaacagtagact 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ataacatcagagtggggtcacattgctttatggattcgacatgatatacaacagtagact 205

                                                              
Query: 124 ttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtg 174
           || ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 204 ttatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 154


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 574
Length adjustment: 8
Effective length of query: 166
Effective length of database: 566
Effective search space:    93956
Effective search space used:    93956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no361_g08.g1 MSMg01no361_g08.g1 CHROMAT_FILE:
MSMg01no361_g08.g1 PHD_FILE: MSMg01no361_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:26 2005
         (537 letters)



>mm_chr17_64403536_64404472
          Length = 937

 Score =  920 bits (476), Expect = 0.0
 Identities = 521/536 (97%)
 Strand = Plus / Plus

                                                                       
Query: 2   ttatattacaagtatggtcccagttctccctgagaacccataaataattggctccaagtt 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ttatattacaagtatggtcccagttctccctgagaacccataaataattggctccaagtt 261

                                                                       
Query: 62  ccctgagcataacacatctacatatactcaaatcacttacgctagaagggtgcagtgttt 121
           |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 262 ccctgagcataacacatctacatatactcaaatcacttacgctaaaagggtacagtgttt 321

                                                                       
Query: 122 gtatatcacatatacacaatctcttaattaatttaaaaattaagttacttatagtaccgt 181
           ||||||||||||||||||||||||||||||||||||| |||||||||| || |||||| |
Sbjct: 322 gtatatcacatatacacaatctcttaattaatttaaatattaagttacctacagtaccct 381

                                                                       
Query: 182 aatataatgttgacataatagttatgtagtatcttttagaggctaataataaagaaatgt 241
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 382 aatataatgttgacataatagttatatagtatcttttagaggctaataataaagaaatgt 441

                                                                       
Query: 242 ctatacatgcttagtacaaatatatattattaaatatattttcagtccacagatggttga 301
           ||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ctacacatgctttgcacaaatatatattattaaatatattttcagtccacagatggttga 501

                                                                       
Query: 302 atactaggatacagaaccttagatacaagagctaaatagaatttgtttgtttcatgtact 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 atactaggatacagaaccttagatacaagagctaaatagaatttgtttgtttcatgtact 561

                                                                       
Query: 362 tttagtgtggctcagaaaatacattgatgtttttatgtaacattgacaaattaataatta 421
           ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 562 tttagtgtggctcagaacatacattgacgtttttatgtaacattgacaaattaataatta 621

                                                                       
Query: 422 ccagatattcggtctatggttgctttgattgaggttatatttacattcaattctaaaata 481
           |||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 622 ccagatattcagtctgtggttgctttgattgaggttatatttacattaaattctaaaata 681

                                                                   
Query: 482 tattctctgtgtgaccatattccattaatacattgaatatcagtaaagctagcttt 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tattctctgtgtgaccatattccattaatacattgaatatcagtaaagctagcttt 737


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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