Query= MSMg01no361_k14.b1 MSMg01no361_k14.b1 CHROMAT_FILE:
MSMg01no361_k14.b1 PHD_FILE: MSMg01no361_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:46 2005
(590 letters)
>mm_chr17_47380000_47380988
Length = 989
Score = 959 bits (496), Expect = 0.0
Identities = 578/636 (90%), Gaps = 51/636 (8%)
Strand = Plus / Plus
Query: 2 cccagggcagaaggagaaagtgactcctgcgaattgtctgctgaccccgacacgtgccgc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 cccagggcagaaggagaaagtgactcctgcgaattgtctgctgaccccgacacgtgccat 217
Query: 62 ggatgagcaggtgctcgctcaagcacacacacagtc-agtacatgtaaggagtttattgc 120
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 218 ggatgagcaggtgctcgctcaagcacacacacagtcga-tacatgtaaggagtttattgc 276
Query: 121 ctcacaatttcactgtggtattgtacatcagacaaagtttggtgctttttcatc------ 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ctcacaatttcactgtggtattgtacatcagacaaagtttggtgctttttcatctctctc 336
Query: 175 --------------------------------------tgtgtgtgtgtgtgttagtcac 196
||||||||||||||||||||||
Sbjct: 337 tctctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttagtcac 396
Query: 197 actagctaaggaaacaaaattccagactctaacttaagtaaatttaagataaccaatacc 256
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 397 actagctaaggaaacaaaattccagac---aaattaagtaaatttaagataaccaatacc 453
Query: 257 agcccatgttaggtggtcctgagcagcagtcaccagagcccgcagagcatcatccgagga 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 agcccatgttaggtggtcctgagcagcagtcaccagagcccgcagagcatcatccgagga 513
Query: 317 ccagagctcacagagcatcattcagcaacccaggctcatccctttttctaggatcttaaa 376
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 514 ccagagctcacagagcatcattcagcaacccaggctcattcctttttctaggatcttaaa 573
Query: 377 atccc--gagtccatcaaagagatgagagagtgtgtaagttgtctcttggtatcctgtct 434
||||| |||||||||| ||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 574 atcccctgagtccatcatagagatgagagagtgtgtaagttgtctcttggtgttctgtct 633
Query: 435 cgtttttattttggattgtttcatcttctgtcttagttagggcttctattgctgtgaaga 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 cgtttttattttggattgtttcatcttctgtcttagttagggcttctattgctgtgaaga 693
Query: 495 aacaccatgaccaaggcaactcttataaaggacaacatttcattggggctggcttacagt 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 aacaccatgaccaaggcaactcttataaaggacaacatttcattggggctggcttacagt 753
Query: 555 ttcagaggttcagtccattatcatcatggcaggaag 590
||||||||||||||||||||||||||||||||||||
Sbjct: 754 ttcagaggttcagtccattatcatcatggcaggaag 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 989
Length adjustment: 10
Effective length of query: 580
Effective length of database: 979
Effective search space: 567820
Effective search space used: 567820
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no361_k14.g1 MSMg01no361_k14.g1 CHROMAT_FILE:
MSMg01no361_k14.g1 PHD_FILE: MSMg01no361_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:46 2005
(295 letters)
>mm_chr17_47506696_47507390
Length = 695
Score = 536 bits (277), Expect = e-157
Identities = 290/295 (98%), Gaps = 2/295 (0%)
Strand = Plus / Minus
Query: 1 ttaagatactctcgggaggcctgaaaccaaaactcaccatgacattactcaagacttttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ttaagatactctcgggaggcctgaaaccaaaactcaccatgacattactcaagacttttc 602
Query: 61 tgctctcattctccatttggtgttcagtggagtcttccagagctgcgtgggttgtaccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tgctctcattctccatttggtgttcagtggagtcttccagagctgcgtgggttgtaccat 542
Query: 121 ctagtaaaagatggtatgcgaaaactaacgagagagaaaagctgcctttgctggaaggct 180
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 541 ctagtaaaagatggtatgcgaaaactaac--gagagaaaagctgcctttgctggaaggct 484
Query: 181 gtgtcccaggcttactcttcttcaaatttgcttctgctttgaaaagcaggctttctaaag 240
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 483 gcgtcccaggcttactcttcttcaaatttgcttctgctttggaaagcaggctttctaaag 424
Query: 241 tgttaactaacctgggacgatatcgaggctggagtgatggttcggcaaccctagc 295
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 423 tgttaactaacctgggacgatatcgaggctggagtgatggctcggcaaccctagc 369
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space: 196196
Effective search space used: 196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
