BAC Information

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BAC

Clone NameMSMg01-361M19
Chromosome17 (Build37)
Map Location 79,654,848 - 79,825,278
singlet/doubletdoublet
Overlap geneLOC383277, Cdc42ep3, LOC639964
Upstream geneCrim1, Fez2, LOC100043888, Hdac1-ps, Vit, Strn, Heatr5b, 2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812
Downstream geneAW061290, Cyp1b1, EG668821, Arl6ip2, LOC625074, Hnrpll, Gpx4-ps, Galm, Sfrs7, 4930560E09Rik, Gemin6, Dhx57, Morn2, Sos1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361M19.T7 (MSMg01no361_m19.b1)MSMg01-361M19.TJ (MSMg01no361_m19.g1)
ACCAG470638AG470639
length745787
length of high quality
(start - end)		257 (49 - 305)483 (78 - 560)
definitionCHROMAT_FILE: MSMg01no361_m19.b1 PHD_FILE: MSMg01no361_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:56 2005CHROMAT_FILE: MSMg01no361_m19.g1 PHD_FILE: MSMg01no361_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,654,848 - 79,655,101)(79,824,796 - 79,825,278)
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTTACTCTTTCGTTTCCTTCTCCGATCTCCCCTTCTTTGTTT
CCTCTCAGACTTCTCAAACTCTTATGGCCAAGAGAGAACATTTGAAAACA
CAACTCCATCTCTCACATCCTGTGATTGCTTTCTGGAGTGACACTTCAAT
GTATTTAAGACAGTTTCTCATCCAAATTCAACTGTCCCTAACCTTCTGCA
GATAACTGCTCCAGGATAAGCCTGGAGGGGATGTGTGTGGGGGGGCGTGG
GGGGGNNANANNNNNNNNNTNTAGTTTTTTTTTNTNTTTGTTTTTNTTTT
TTGGTTTATTTTTNGTTGTTTGTTTTGTNTTTTTTGGTTTTTTTTTTTTG
TTTTTGTTTTTTGNTNTGTTTGTTTTGTNTTTTGTGGTGTTTGTTTTTTT
TTNTTGTTTTTTTGTGGTGTGTTTTTGGTTTTTGTTTTTTTTGTGTTTTT
TGTTTTTGTTTTTTTTTTGGTTTTTTGGTTTTTTGTGGTTTTTGTTTGTT
TTTTTGGGGGGTTTGTTTTATGTTGTGTTTGTTTTTTTTTTTTTTGATTT
GGTGTTGTGTAGTTATTATTAGTTGAGTTTGTAAATTATTAAAATATTTA
ATTTTAATAAAAAGTTATTTTTTTATATTATTTAATATATTAAAAAGATT
GATGTAAATGTTATTTATAATTTTAATTAATATTTTGGATAATTA

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTCTCAAAATATGCCCATTTGC
TCTGCTGTTATGACATTCCCCCTCACTTTTAACTCATACTTCTTCAACAA
ATTGTACTTGGGCAAACACTCAGCACTGGTCAGATAATATTTTTTATTTC
AAAACGTCAAAGAGCTCTTTGCCATAGTGTTTTATAAACCATAGGATTAT
TTGATTATTTAAAGTTGGGAGAAGCATTGAGATGCCCATGACTCCTGACT
TCCCTAAGGAGTGTTAACTGAATAAATGAGTAGCTGTGGTGCTCAGCCCG
GCCTGGATATCATTTTTGCCCACTGGTCTGTGACATGAGAGAAGTCAACA
GAGAAAATGTGACTTGAAGGCCACTTCCTGTTTCTGAGACCTTAAAGCAG
TGGAGAACCTTAGACATGAGGATCAGAAGTAGAGACTGAGATTAAAGTGC
TATCTCATTGCTAACTCCCTAAAGGAGTTTCCCGAGATATCTGTGGGAGG
GTTACAGAGAGAGGGAGGATGTTTGGGAATTGGTTCAGTGTATAGAAAGC
TTTGATTGGCATCCAAGTTCTAATCTCAGTATTCTTTTAAACAAATTTAC
TCCATCCTACCTTTATATATTTTTACTTATCTTACCACTCCATCATTGGA
GCTTGGGTGGGGTGGTGTAATCCCCCCCTTTTTTAGGTTTCCACCCCTAC
CATTTTTTTTTCCCTTTTCCTTTCCCCTTTCCCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_m19.b1 MSMg01no361_m19.b1 CHROMAT_FILE:
MSMg01no361_m19.b1 PHD_FILE: MSMg01no361_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:56 2005
         (257 letters)



>mm_chr17_79654645_79655301
          Length = 657

 Score =  491 bits (254), Expect = e-143
 Identities = 254/254 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccttactctttcgtttccttctccgatctccccttctttgtttcctctcagact 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccttactctttcgtttccttctccgatctccccttctttgtttcctctcagact 263

                                                                       
Query: 64  tctcaaactcttatggccaagagagaacatttgaaaacacaactccatctctcacatcct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tctcaaactcttatggccaagagagaacatttgaaaacacaactccatctctcacatcct 323

                                                                       
Query: 124 gtgattgctttctggagtgacacttcaatgtatttaagacagtttctcatccaaattcaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtgattgctttctggagtgacacttcaatgtatttaagacagtttctcatccaaattcaa 383

                                                                       
Query: 184 ctgtccctaaccttctgcagataactgctccaggataagcctggaggggatgtgtgtggg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctgtccctaaccttctgcagataactgctccaggataagcctggaggggatgtgtgtggg 443

                         
Query: 244 ggggcgtggggggg 257
           ||||||||||||||
Sbjct: 444 ggggcgtggggggg 457


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 657
Length adjustment: 9
Effective length of query: 248
Effective length of database: 648
Effective search space:   160704
Effective search space used:   160704
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no361_m19.g1 MSMg01no361_m19.g1 CHROMAT_FILE:
MSMg01no361_m19.g1 PHD_FILE: MSMg01no361_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:57 2005
         (483 letters)



>mm_chr17_79824596_79825478
          Length = 883

 Score =  934 bits (483), Expect = 0.0
 Identities = 483/483 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctcaaaatatgcccatttgctctgctgttatgacattccccctcacttttaactcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 attctcaaaatatgcccatttgctctgctgttatgacattccccctcacttttaactcat 624

                                                                       
Query: 61  acttcttcaacaaattgtacttgggcaaacactcagcactggtcagataatattttttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 acttcttcaacaaattgtacttgggcaaacactcagcactggtcagataatattttttat 564

                                                                       
Query: 121 ttcaaaacgtcaaagagctctttgccatagtgttttataaaccataggattatttgatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttcaaaacgtcaaagagctctttgccatagtgttttataaaccataggattatttgatta 504

                                                                       
Query: 181 tttaaagttgggagaagcattgagatgcccatgactcctgacttccctaaggagtgttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tttaaagttgggagaagcattgagatgcccatgactcctgacttccctaaggagtgttaa 444

                                                                       
Query: 241 ctgaataaatgagtagctgtggtgctcagcccggcctggatatcatttttgcccactggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctgaataaatgagtagctgtggtgctcagcccggcctggatatcatttttgcccactggt 384

                                                                       
Query: 301 ctgtgacatgagagaagtcaacagagaaaatgtgacttgaaggccacttcctgtttctga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ctgtgacatgagagaagtcaacagagaaaatgtgacttgaaggccacttcctgtttctga 324

                                                                       
Query: 361 gaccttaaagcagtggagaaccttagacatgaggatcagaagtagagactgagattaaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gaccttaaagcagtggagaaccttagacatgaggatcagaagtagagactgagattaaag 264

                                                                       
Query: 421 tgctatctcattgctaactccctaaaggagtttcccgagatatctgtgggagggttacag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgctatctcattgctaactccctaaaggagtttcccgagatatctgtgggagggttacag 204

              
Query: 481 aga 483
           |||
Sbjct: 203 aga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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