Query= MSMg01no362_k04.b1 MSMg01no362_k04.b1 CHROMAT_FILE:
MSMg01no362_k04.b1 PHD_FILE: MSMg01no362_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:05 2005
(520 letters)
>mm_chr17_90694401_90695321
Length = 921
Score = 984 bits (509), Expect = 0.0
Identities = 515/517 (99%), Gaps = 1/517 (0%)
Strand = Plus / Minus
Query: 5 gaattc-caagtgttacttgcagtaaacggtgaaatagttatataaggataagggtcatt 63
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gaattcacaagtgttacttgcagtaaacggtgaaatagttatataaggataagggtcatt 662
Query: 64 tggggtaattaatatattctgctgacttatagaagctctggggaatatacacaccaccaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tggggtaattaatatattctgctgacttatagaagctctggggaatatacacaccaccaa 602
Query: 124 tctgagtgatactctgatctcagaatgtggacagtttgtaagatggcatggacaggcagg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tctgagtgatactctgatctcagaatgtggacagtttgtaagatggcatggacaggcagg 542
Query: 184 caggcaggtggggcaaatatcatggaataatagtatcagtgtctgtgggctatagttcct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 caggcaggtggggcaaatatcatggaataatagtatcagtgtctgtgggctatagttcct 482
Query: 244 tgacctattccagaagcactgtctgatgtattcttcatgaaatctgtaagagatacagct 303
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 481 tgacctattccagaagcactgtctgatgtattcttcatgaaatctgtaagagctacagct 422
Query: 304 tgtatttctcatcttgtagaaaaggaaagtgagtttccaaaattttaagttaattacaaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgtatttctcatcttgtagaaaaggaaagtgagtttccaaaattttaagttaattacaaa 362
Query: 364 gtcttctgggatagtatcagaaatgaggtttacaactagatatgtcctatttcagaacaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gtcttctgggatagtatcagaaatgaggtttacaactagatatgtcctatttcagaacaa 302
Query: 424 taggagacaggctaactcctcatatttccacagcagtttgcatccttctatctaactttg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 taggagacaggctaactcctcatatttccacagcagtttgcatccttctatctaactttg 242
Query: 484 agctccttagctgaacactattatgatttccccactg 520
|||||||||||||||||||||||||||||||||||||
Sbjct: 241 agctccttagctgaacactattatgatttccccactg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 921
Length adjustment: 10
Effective length of query: 510
Effective length of database: 911
Effective search space: 464610
Effective search space used: 464610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no362_k04.g1 MSMg01no362_k04.g1 CHROMAT_FILE:
MSMg01no362_k04.g1 PHD_FILE: MSMg01no362_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:05 2005
(525 letters)
>mm_chr17_90517723_90518647
Length = 925
Score = 969 bits (501), Expect = 0.0
Identities = 519/525 (98%)
Strand = Plus / Plus
Query: 1 actaacaatacatgcaagagttggttgtatggacagtagggtgtccatctgtgtgtgact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actaacaatacatgcaagagttggttgtatggacagtagggtgtccatctgtgtgtgact 260
Query: 61 cagaagacttcacagattatttctcagtctgggaacttctgtgatttcccgaagaccatt 120
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 cagaagactacacagattatttctcagtatgggaacttctgtgatttcccgaagaccatt 320
Query: 121 attagggtttctggccatccagacatcatggctgaagaagtaggtctctaatactaaatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attagggtttctggccatccagacatcatggctgaagaagtaggtctctaatactaaatc 380
Query: 181 tcactttgttcatttagggtttcctctctgaacatccatagaattattcaaagccctctc 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 tcactttgttcatttagggtttcctctctggacatccatagaattattcaaagccctctc 440
Query: 241 tttgccatccttttcttccctcctttgtcttccaaatcaataatctgaaggtggaggaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttgccatccttttcttccctcctttgtcttccaaatcaataatctgaaggtggaggaat 500
Query: 301 cacacactatttgtggtgttcaaaaggtatccaatttggcacaattaattatagcctagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacacactatttgtggtgttcaaaaggtatccaatttggcacaattaattatagcctagc 560
Query: 361 caaagaaagtttaatcctgagtttctatcatctgtaatcctcaaatgctgtggctgattg 420
|| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 cagagaaagttaaatcctgagtttctatcatctgtaatcctcaaatgctgtgactgattg 620
Query: 421 tccatattcatccaggctttaatatgcatctagcttaagacaaatcacaataacaaggga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tccatattcatccaggctttaatatgcatctagcttaagacaaatcacaataacaaggga 680
Query: 481 ggctaaaggctattgctcacctcatcactaaaccaataaaatatt 525
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggctaaaggctattgctcacctcatcactaaaccaataaaatatt 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space: 471225
Effective search space used: 471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
