XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTAAGAA
ATTAGCTTAGTGGCTTTCCCCTGGCTTGTAATTAGAACCATGTTCATCAT
CAGGCTTCTAACTCTGATCCTCTTCTGCTCAGTTTCTCCCTTTCTTTGGA
GTTTGTCTGATTTCTAAGGAGCCATTAGTTCAATGTCTCATTGTAGTCAA
GTAGAATCCCTGCTATTTATACTAAAATTTGCTTATTGCTATTATTATGG
ACATATGTGTTACATTCCTTATTGGCCACCCACCTCTTAAACTTAGCGTG
GTATCAACATTTCTCACATATTCTTTCTGCACATCCTCATAGCAACTAGA
ACTTTACTTTCTTGATGTTTTTTAACTTGCACTTTCCCAGTGGGAAATCC
AATCTGGTATTATTGTCAGTGACAAAGAAAGTGCTAATTAGCAGATGAAT
GCAATTAGTAGTTACCTCAAATATTATCAGGTAACTTCTGTCGCTGACAT
GTACTTACTGTAGAAGCCAGCATTTTTTTTTCACTGTATATAATGCAAGC
TCAACACAATATGAACACATATATTTTTTTAAAAGCTCTGCACCTAAAGA
ATGCAGCATTAGTATTGGAATGATGAGAACTCCGGGCCTTTTCGGTAGGC
TAGAAATTTTAAACTTCTCCGCTCCAAACATGGAGTAAAGTCTTCTCTTC
GTCTGAAAGGGAATGGCTTTTTTTCTGTGAATTTTGGGGTCTCCTCCTGG
GGTAATAATAATTT

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTATGAGGCTATCTTCCCTCTCTCCC
TCCCTCTCTCCCTCCTTCCTCCCTCTCTTCCCTCCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTGTCTTTTATTGGTTATTT
TATTTTTTTACATTTCAAACCGATACTTCTGCAAACACCCTATCACATTG
CCCCTCTCCTCTGCTTCTTTGAGAGTGGTCCCCACCCACCCACTCACTTC
TTCCTAACCACCATGACATTCCCCTGCACTGGGGCCCCAAGCCTTCACAG
GACCAAGGGGCTTCTTCCCCCAGTTGATGCCAGATAAGTCAATACTCTGC
TACATATGAAGTTGGAGTCATGGGTCACTCCATATATACTCTGGTTGGTG
GTTTAGTCCCTGGGAGCTCTGGAGTGTCTGGTTGGTTGATATTGTTGTTC
TTCCTATGGGGTTGTGAAAGCTTTCAGCTCCTTCAGTCCTCCTAACTCCT
CCATTGGTGTCCCTGCTCTCAGTCCAATAGTTGACTGTGAGCATTCCCAT
CTGTATTGGTTAGGTTCTGGTATAACCTCTAATGGGGACAGCTATTACCA
GTCTCTTGTCTGGAATCATCTTTTCCTCATCTCCAATACCTGTTTGGGTT
TTTGAATCTTCTATAAGGGATGGGATTCTTAGGTTATGGTCTTACTCTTT
ATTGGGCCTTTTTTTTTCAC

Query= MSMg01no363_a20.b1 MSMg01no363_a20.b1 CHROMAT_FILE:
MSMg01no363_a20.b1 PHD_FILE: MSMg01no363_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:38 2005
         (480 letters)



>mm_chr17_90038939_90039818
          Length = 880

 Score =  868 bits (449), Expect = 0.0
 Identities = 467/473 (98%), Gaps = 2/473 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagtggctttcccctggcttgtaattagaaccatgttcatcatcaggcttctaactctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagtggctttcccctggcttgtaattagaaccatgttcatcatcaggcttctaactctga 260

                                                                       
Query: 61  tcctcttctgctcagtttct-ccctttctttggagtttgtctgatttctaaggagccatt 119
           |||||||||||||||||||| ||||| |||||||| ||||||||||||||| ||||||||
Sbjct: 261 tcctcttctgctcagtttcttccctt-ctttggagattgtctgatttctaatgagccatt 319

                                                                       
Query: 120 agttcaatgtctcattgtagtcaagtagaatccctgctatttatactaaaatttgcttat 179
           ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 320 agttcaatgtctcatcgtagtcaagtagaatccgtgctatttatactaaaatttgcttat 379

                                                                       
Query: 180 tgctattattatggacatatgtgttacattccttattggccacccacctcttaaacttag 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgctattattatggacatatgtgttacattccttattggccacccacctcttaaacttag 439

                                                                       
Query: 240 cgtggtatcaacatttctcacatattctttctgcacatcctcatagcaactagaacttta 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cgtggtatcaacatttctcacatattctttctgcacatcctcatagcaactagaacttta 499

                                                                       
Query: 300 ctttcttgatgttttttaacttgcactttcccagtgggaaatccaatctggtattattgt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctttcttgatgttttttaacttgcactttcccagtgggaaatccaatctggtattattgt 559

                                                                       
Query: 360 cagtgacaaagaaagtgctaattagcagatgaatgcaattagtagttacctcaaatatta 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cagtgacaaagaaagtgctaattagcagatgaatgcaattagtagttacctcaaatatta 619

                                                                
Query: 420 tcaggtaacttctgtcgctgacatgtacttactgtagaagccagcattttttt 472
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tcaggtaacttctgtcgctgacatgtacttactgtagaagccagcattttttt 672


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)