BAC Information

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BAC

Clone NameMSMg01-364M23
Chromosome17 (Build37)
Map Location 50,892,766 - 50,893,147
singlet/doubletsinglet
Overlap geneTbc1d5
Upstream geneKif6, EG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl, Plcl2, EG654432
Downstream geneLOC100043451, LOC100043452, Satb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364M23.T7 (MSMg01no364_m23.b1)MSMg01-364M23.TJ (MSMg01no364_m23.g1)
ACCAG472916AG472917
length779789
length of high quality
(start - end)
386 (53 - 438)435 (84 - 518)
definitionCHROMAT_FILE: MSMg01no364_m23.b1 PHD_FILE: MSMg01no364_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:04 2005CHROMAT_FILE: MSMg01no364_m23.g1 PHD_FILE: MSMg01no364_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTTTATTTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCTTGCCATGAACAGAACATCAAGAAGGTAATGAACAA
GACAAAGAATCCTGAGAAGTAACTGGTATACTAACACTCTCAGATGGCAC
ACACTTTGGCAGCCTGCAGCCTGCACAGAGCCAAGGCTCAGCGGGCTTCA
TGTTAGGAAGTGCTCAGGCACCAAGCCGTGATTAAGTTATTCTTGTTCAC
AAACTAAGGTTAGGGCAAACAGACCGAATTCTGAAAATCTTTTAGTATCA
TTTGATAAATCAGTATGTATTAGGTATATAATACTGGTCCCAGATCTTCA
ACTAACAAGTCTCGGGGTCCTGGATAAGCCAGAACTAAGTGCTATGACCG
TGAGCTTCCTGAGACTCAAAAGGGAAAGAGGAAATGATCCCGTTGAATAT
CCCATTTGAGTCATGTCCTCGTCCTAGTGTTTAAAAATACATCTTGGCAA
CAAACTGGCCAGAATGATGAGATTCTTATCTCATTTTACTGAAGGCACTC
CCGGCCAGGAAGGCTAAATTGAAAAGCCAGACAAGGTTCCTTGTTTTTTT
TGTAGAACCCGGGATCTCATACAAGGTTCCCGGACCTCTTGGTACAAGCG
TGAACCCCAAGGCCCCTACACAAAATTCCCCACCGGTTCCCGGGTGGCGC
AAAAATATTTTTTTCTTTATATACAAATAACTTTTTTTTCCTCCCCTTTA
CAAGGAATTACTTATTAACTTCTTCCCCC
AACTATTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCACTTTGCAGTTTAC
AAACTACCTTTAGTTTTATTTTGGGGGATTAAAGGATTGTACTAAGGATG
TGTCTATATTCCAGCCAGCTCATACTGTAATCCACCGCATGTGTGCCTTC
CATCTGGACTATTTATACCTATAAGGTCTTTGGATGTGATCCTTTGCCAG
AGTAGCCATGTTCCTGGATTAAATGTCCTCTATAGCTTTGAATTTCTTTC
TGGGAGACAAAATGTGAACATGCTGTATTAATTTTTATAGCCCCATAACT
TCTTTTTTTGTATTAAATACATATTATTTTCTTTTTCATTAGATATTTTC
TTTATTTACATTTCAAATGCTATCCTGAATGTTCCCTATACACTCCCCCA
GCCCCGCTCCCCTACCCACCCACTCCCACTTCTTGGGCCTGGCATTCCCC
TGTACTGGGGCATATAAAGTTTGCATACCAAGAGGCCTCTCTTCCCGATG
AATGGCCACTAAGGCATCTTTCCCTACCTAGGCGCCTAAAGACACGAACT
CTGGGGGTACTGGTTAACTTATATTTTTTTTCTCCCCCCAAATTTTCTTG
AAATTGATGCGAACCCATCCCTTCCTCTCGTAATGAGTTCTCTGCTTTGT
CTTCCCCCCCACTCTTCTGTTTATACATGTGTTTTTCTCTGCCTAACTTT
CCTTTTGTACTTTCATACTATCACATTTATTCTTTACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_m23.b1 MSMg01no364_m23.b1 CHROMAT_FILE:
MSMg01no364_m23.b1 PHD_FILE: MSMg01no364_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:04 2005
         (386 letters)



>mm_chr17_50892562_50893347
          Length = 786

 Score =  716 bits (370), Expect = 0.0
 Identities = 379/382 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcttgccatgaacagaacatcaagaaggtaatgaacaagacaaagaatcctgag 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcttgacatgaacagaacatcaagaaggtaatgaacaagacaaagaatcctgag 264

                                                                       
Query: 65  aagtaactggtatactaacactctcagatggcacacactttggcagcctgcagcctgcac 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagtaactggtatagtaacactctcagatggcacacactttggcagcctgcagcctgcac 324

                                                                       
Query: 125 agagccaaggctcagcgggcttcatgttaggaagtgctcaggcaccaagccgtgattaag 184
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agagccaaggctcagtgggcttcatgttaggaagtgctcaggcaccaagccgtgattaag 384

                                                                       
Query: 185 ttattcttgttcacaaactaaggttagggcaaacagaccgaattctgaaaatcttttagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttattcttgttcacaaactaaggttagggcaaacagaccgaattctgaaaatcttttagt 444

                                                                       
Query: 245 atcatttgataaatcagtatgtattaggtatataatactggtcccagatcttcaactaac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atcatttgataaatcagtatgtattaggtatataatactggtcccagatcttcaactaac 504

                                                                       
Query: 305 aagtctcggggtcctggataagccagaactaagtgctatgaccgtgagcttcctgagact 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aagtctcggggtcctggataagccagaactaagtgctatgaccgtgagcttcctgagact 564

                                 
Query: 365 caaaagggaaagaggaaatgat 386
           ||||||||||||||||||||||
Sbjct: 565 caaaagggaaagaggaaatgat 586


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space:   292929
Effective search space used:   292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)