BAC Information

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BAC

Clone NameMSMg01-364N07
Chromosome17 (Build37)
Map Location 95,047,245 - 95,261,842
singlet/doubletdoublet
Overlap geneLOC668886, Mettl4, 2700099C18Rik, LOC100043754, LOC668888, LOC100038868
Upstream geneLOC668885
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364N07.T7 (MSMg01no364_n07.b1)MSMg01-364N07.TJ (MSMg01no364_n07.g1)
ACCAG472932AG472933
length795810
length of high quality
(start - end)		449 (48 - 496)341 (78 - 418)
definitionCHROMAT_FILE: MSMg01no364_n07.b1 PHD_FILE: MSMg01no364_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:05 2005CHROMAT_FILE: MSMg01no364_n07.g1 PHD_FILE: MSMg01no364_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,047,245 - 95,047,689)(95,261,520 - 95,261,842)
sequence
NNCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCG
CGGAATTCTCTTTGGATAACTGTTCTCATAATAAGCAAAATTGCTAGCAT
CTATCACCTGTGATGTAATCGTATAAAAGCCTCTTCTAGCTTTATCCCCA
GAAGGTACTTCTCTCTATTCCATTATCATGACAAATGGAGAGGTGTTTGC
ACAACACTGGGCCATTACAGAATTCTACAGGGACTACTAGAACAGCACCA
ATGGCTCCTGATACCTACAACTAAGTCAGCCTCATGTGCAACCGATGGCC
TTCACTCACAGTATTTCTTTCTGGAAAAACAACCCACAACTAAATTCAAC
TGTATCCTAAGGTCATCACAAACATGGGTCCAGGAGTAAATAAATCACTG
TGTGTTAGAACAGATAGTGGTCAAATATTCATCTTTGGGGATGAATTCGA
CAGTTTGTCTCAGGTTACAAGAGTCATGTTAGTCTATCCTGCCATGTAGC
ANACTCCTGATGACACCTCATGATCACATAAGAGCAATTAGGATTTGGAG
GTGAAGCTCAAATGTGTATTAATTTAATATAAAATCCAAACCATCCTTTT
TTTTTATCACCCTCCGGGCAAATACAATTGGCTGATAACTTCTCCCTTTT
ATCTTGTGCGCCTAACTTTTTCTTCTCCTTCCCCTTAATAACTCCATTTC
CCCTTTTTTCGTCGGATATTTTTTTAACCTCTTCAATACCCTTACCGGTG
TTATTTGACTCCCTCCTGTGTTAACTAATATAATACTTTTTTTCT

NCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAGAAGATAAAACTTTGTAAATA
CAGGGTTGGAGAAATGGCTCAGCAGTTAAGAGCACTGACTGCTCTTCCAG
AAGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGATCATAACCATCTG
TAATGGGATCTGATGCCCTCTTCTGGTGTGTGTCTGAAGACAGCTACAAT
GTACTCATATAAATAAAATAAATAAATAATATTAAAAATAAAAAATTGTA
AATACAATTTATACTTAAAAATGCAAGCTTATACAGAATTCTGAAATATT
TAAATAAGGATGGCGGGGATGGCGGGAGCCGGAGCTGGTGCAGGAGCTCG
GGGCGGCATGCCGACGGGAGTGCACACCATGTGCAAGTCTGGGGTCTTGT
TGGCTAGATGCTCTATGCAGCACAGCAGACAACCCCTCACTCATTGCTTA
TAAAACCAGAGGAAATTACCCGTAACTTATGACTATCTCAATTATACATA
TAAATGGAAGAAAATGATTTCCTAAAAAGATCCTTGTAGGATTTTTTGTT
ACATTTTACATAAATTAAGCTTAACCAATTTTTTACAATTTTTAGCATGT
TTTTAAAGGATTTTTTATTCTCCTTGAATTCCCCCTTCTCCCGGGTTAAA
GGGCCTATCTTTTTTATTTCAATAAGATACTTTCTATAATTTGGTTTTAT
TATTCCCTAAATTCTGTACAATATCTTTTTTTCTTTTTGCTGGGTCTCAT
CATATATCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_n07.b1 MSMg01no364_n07.b1 CHROMAT_FILE:
MSMg01no364_n07.b1 PHD_FILE: MSMg01no364_n07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:05 2005
         (449 letters)



>mm_chr17_95047041_95047889
          Length = 849

 Score =  853 bits (441), Expect = 0.0
 Identities = 444/445 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattctctttggataactgttctcataataagcaaaattgctagcatctatcacctgt 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattctctttggagaactgttctcataataagcaaaattgctagcatctatcacctgt 264

                                                                       
Query: 65  gatgtaatcgtataaaagcctcttctagctttatccccagaaggtacttctctctattcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatgtaatcgtataaaagcctcttctagctttatccccagaaggtacttctctctattcc 324

                                                                       
Query: 125 attatcatgacaaatggagaggtgtttgcacaacactgggccattacagaattctacagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attatcatgacaaatggagaggtgtttgcacaacactgggccattacagaattctacagg 384

                                                                       
Query: 185 gactactagaacagcaccaatggctcctgatacctacaactaagtcagcctcatgtgcaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gactactagaacagcaccaatggctcctgatacctacaactaagtcagcctcatgtgcaa 444

                                                                       
Query: 245 ccgatggccttcactcacagtatttctttctggaaaaacaacccacaactaaattcaact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccgatggccttcactcacagtatttctttctggaaaaacaacccacaactaaattcaact 504

                                                                       
Query: 305 gtatcctaaggtcatcacaaacatgggtccaggagtaaataaatcactgtgtgttagaac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtatcctaaggtcatcacaaacatgggtccaggagtaaataaatcactgtgtgttagaac 564

                                                                       
Query: 365 agatagtggtcaaatattcatctttggggatgaattcgacagtttgtctcaggttacaag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agatagtggtcaaatattcatctttggggatgaattcgacagtttgtctcaggttacaag 624

                                    
Query: 425 agtcatgttagtctatcctgccatg 449
           |||||||||||||||||||||||||
Sbjct: 625 agtcatgttagtctatcctgccatg 649


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space:   368321
Effective search space used:   368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no364_n07.g1 MSMg01no364_n07.g1 CHROMAT_FILE:
MSMg01no364_n07.g1 PHD_FILE: MSMg01no364_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:05 2005
         (341 letters)



>mm_chr17_95261102_95261842
          Length = 741

 Score =  609 bits (315), Expect = e-179
 Identities = 321/323 (99%)
 Strand = Plus / Minus

                                                                       
Query: 19  aaatacagggttggagaaatggctcagcagttaagagcactgactgctcttccagaagtc 78
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaatacagggttggagaaatggctcagcagttaagagcactgactgctcttccagaagtc 682

                                                                       
Query: 79  ctgagttcaattcccagcaaccacatggtggatcataaccatctgtaatgggatctgatg 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgagttcaattcccagcaaccacatggtggatcataaccatctgtaatgggatctgatg 622

                                                                       
Query: 139 ccctcttctggtgtgtgtctgaagacagctacaatgtactcatataaataaaataaataa 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccctcttctggtgtgtgtctgaagacagctacaatgtactcatataaataaaataaataa 562

                                                                       
Query: 199 ataatattaaaaataaaaaattgtaaatacaatttatacttaaaaatgcaagcttataca 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ataatattaaaaataaaaaattgtaaatacaatttatacttaaaaatgcaagcttataca 502

                                                                       
Query: 259 gaattctgaaatatttaaataaggatggcggggatggcgggagccggagctggtgcagga 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaattctgaaatatttaaataaggatggcggggatggcgggagccggagctggtgcagga 442

                                  
Query: 319 gctcggggcggcatgccgacggg 341
           |||| |||||||| |||||||||
Sbjct: 441 gctcagggcggcacgccgacggg 419


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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