BAC Information

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BAC

Clone NameMSMg01-365H10
Chromosome17 (Build37)
Map Location 15,979,636 - 15,980,157
singlet/doubletsinglet
Overlap genenone
Upstream geneWdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3, C330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365
Downstream geneEif3s6-ps3, LOC100041383, LOC100041394, LOC213781, LOC100041407, LOC665072, EG383211
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365H10.T7 (MSMg01no365_h10.b1)MSMg01-365H10.TJ (MSMg01no365_h10.g1)
ACCAG473412AG473413
length760742
length of high quality
(start - end)		509 (63 - 571)471 (57 - 527)
definitionCHROMAT_FILE: MSMg01no365_h10.b1 PHD_FILE: MSMg01no365_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:58 2005CHROMAT_FILE: MSMg01no365_h10.g1 PHD_FILE: MSMg01no365_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATTTGGCGGCGCTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TAGATATCCTCAGCGATGAGGGAGATTTGCCCCTGGACCGCTGAGGAGAC
AGACGTAAGAAGAAACCTGTCACATAGCTGAACCCAGGTTAAAATAAAAG
GGATAACTAAGTTAAGAGCTAGTTGTAAAACAAGGTAAAGTTTATGGCCT
AAGCACTTATTAATAAATAATTAGTTTCAGATTTCTGGGAATTAAGTGGT
TGGGAAGAACAGCCTAAAATTTACAGTAACCATCTTGCAACCCTACCTTT
TGTTTCAAAAAGGTCGTTATGGCTATCTTCTTATGGTTACCTGTTGTTAC
GATCACTTTGCAATCATGTCTTTGTTTCAGGAGAAACAAATCAAACAGAC
AAGCAAAGCTGACCAGCAGTCTTTGTGCATCTCTTGGCTTCCTTGTGCTT
CTTCTTATGGCAATTTAGGCTGATTTTCTTTAGCTACAAAGTGTGATGTC
AATCAAATCTCATATTCTGGTGTCTGTTTGGGTTCCAAACAACCTTATTA
GTCATGCTTTTGCTTTCTTAAAAATTCCAAAGCTGCAGTATGGTGATGCA
TATATCTTTGGNCTAAGCCCTTAAAAGATGGGGGATTGATGCTTTCAGCT
CGCCTTCGTGGAATATCTATGATCCTGTCCAACACCCCATATTTTCTCGA
GTAATAACTCTTTCCCCATTACCGCCATCGCGAAATTTATTCTCTTTTTC
CCTTTTTGGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCATGTATCTCATCATGAAATCTTGTTTTATGATCTATAACAGTC
CTGAACTCTTCTTCTTTTAATAAAGTATAAAATGTTTATTTTAATTAAAA
AAAAAGAAGCAGTGTTACGTGTAATATTTTTCTCCTTTGGGATGTCATGT
CTCCCTTCAATGTTTCCTATGGACAAACCTTAAAGTTCATTCCATATAGT
ATCCATAAATTCATTCTATTAAAAAAATAAAAAGTCTGGGGAGATAGCTG
ATTTGGTGAAGTGCTTCCCTTGCAAGCATGAAGACCTCCTTTTGATCTGC
AGAACCCATGTAAAAAGGATCCAGGTGTCATCTCGTATGCTTGTAATCCT
GGAACTGGGGAAGAGAAGGCACATGGATCCCTGGAGGGGAGTGGGGGACT
CATCAACCAGCCAGCCTAGTCAAACTAGCAAGATCCAGGCAAGTGTGGGA
TGCTATCTCANAATAAATATAAAAAANGTAAAATAGAAAAAAGATATTGT
ACTTAATAAATGAAAGCAAAGATTGTTCTCTGGTCTGTGCACACACACAC
TCTTTCACCCACTCTCTCATAATCACACACATACTCACACCTCTTAAAAA
AATTCAAGGGGTAAAAGGGCCTTGCTTAACCGTGTGGTCCCATACTTGGA
AAACCAAAAAGGGCTTATGTTCATGGCTCCACACAAAAAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_h10.b1 MSMg01no365_h10.b1 CHROMAT_FILE:
MSMg01no365_h10.b1 PHD_FILE: MSMg01no365_h10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:58 2005
         (509 letters)



>mm_chr17_15979436_15980344
          Length = 909

 Score =  909 bits (470), Expect = 0.0
 Identities = 503/522 (96%), Gaps = 13/522 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcgatgagggagatttgcccctggaccgctgaggagacagacgtaagaagaaacctgtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 gcgatgagggagatttgcccctggaccgctgaggagacagacgtaagaagaaaccagtca 260

                                                                       
Query: 61  catagctgaacccaggttaaaataaaagggataactaagttaagagctagttgtaaaaca 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catagctgaacccagtttaaaataaaagggataactaagttaagagctagttgtaaaaca 320

                                                                       
Query: 121 aggtaaagtttatggcctaagcacttattaataaataattagtttcagatttctgggaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggtaaagtttatggcctaagcacttattaataaataattagtttcagatttctgggaat 380

                                                                       
Query: 181 taagtggttgggaagaacagcctaaaatttacagtaaccatcttgcaaccctaccttttg 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagtggttgggaaggacagcctaaaatttacagtaaccatcttgcaaccctaccttttg 440

                                                                       
Query: 241 tttcaaaaaggtcgttatggctatcttcttatggttacctgttgttacgatcactttgca 300
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 tttcaaaaaggtcgttatggctatcttcttatggttacctgttgttacaatcactttgca 500

                                                                       
Query: 301 atcatgtctttgtttcaggagaaacaaatcaaacagacaagcaaagctgaccagcagtct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcatgtctttgtttcaggagaaacaaatcaaacagacaagcaaagctgaccagcagtct 560

                                                                       
Query: 361 ttgtgcatctcttggcttccttgtgcttcttcttatggcaatttaggctgattttcttta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgtgcatctcttggcttccttgtgcttcttcttatggcaatttaggctgattttcttta 620

                                                                       
Query: 421 gctacaaagtgtgatgtcaatcaaatctcatattctggtgt-------------ctgttt 467
           |||||||||||||||||||||||||||||||||||||||||             ||||||
Sbjct: 621 gctacaaagtgtgatgtcaatcaaatctcatattctggtgtacaatttctaggtctgttt 680

                                                     
Query: 468 gggttccaaacaaccttattagtcatgcttttgctttcttaa 509
           ||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 681 gggttccaaacaaccttaaaagtcatgcttttgctttcttaa 722


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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