BAC Information

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BAC

Clone NameMSMg01-366I05
Chromosome17 (Build37)
Map Location 57,740,659 - 57,741,194
singlet/doubletsinglet
Overlap genenone
Upstream geneSafb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1, Emr1, EG224916
Downstream geneCntnap5c, LOC674419, LOC620408, EG545216
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366I05.T7 (MSMg01no366_i05.b1)MSMg01-366I05.TJ (MSMg01no366_i05.g1)
ACCAG474208AG474209
length747746
length of high quality
(start - end)		538 (56 - 593)501 (86 - 586)
definitionCHROMAT_FILE: MSMg01no366_i05.b1 PHD_FILE: MSMg01no366_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:23 2005CHROMAT_FILE: MSMg01no366_i05.g1 PHD_FILE: MSMg01no366_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCCAGTTTTATGTTTGATACCAAATTCCTTACAAAAT
GAAGTAAAATTGTTGCTAGTATAGGATGGCCCATTATCTGTCTTAATGAG
TTCAGGCAATCCCATAGCATTAAAGGCTTGTAAACAATAATCAATTACAT
TTCTAGAGGCCTCTCTGGTATGTAGAGAAGCAAAAAGAAATCCTGAACAA
GTGTCAATACAAACGTGTATATATTTTAATTTTCCAAATTCCGCATAATG
AATTACATCCATTTGCAGCAATTGATTAAGTATAAGTCCTCAAGAATTAA
CACCATTATATGGAAACAGGTAGAAACTGAGGACACTAAGAACAATTTTT
TTTACAATTTGACATGCATATTCTCCAAAATATTATCTTAAGCCATTGCT
GTTTTGATTATATAAAGAATGATATTATATGGCCAATTATTTTTGTGTAA
GGCCTTTAATCTGCCTGAGATATAAATCTAACATGGTGCCAGGGACTCCG
GTGGAGTCAGCTTGACAGATGAAAGTCTGAAAGCTTTCTCATGAGGAAAA
AGTTTCAAGGAAACTTACTCCCGGATCTTTGGCTATTTCCCTAACCCATA
AAATTAATTTTCCAAATCCACTTTAGTCTAGTGTATGGATCCCCGGGCAC
TCCTATATAGATTACCCTTATAGAAATGGCCTCTTAAAAAGTATTCC

NAAAAAATCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGGTTATTCCTCTT
ATAAATCTCATGTTGTACTTATCTTGTGACTTTTGCTTGAACTACAGAAA
CCAGAGAAACAGACTTCTATAATGTAAAAATACACATAACTCCATTGGCC
TTTCTATACTTTATTTGAAGGAAGCACTGGGTTTACCACTCAGTTCTTCA
TTTCAGACAAGTGATCATGTAGCCAGAGATGCCTGAGTCAGTTGTTTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCTCTGATGTGT
TGTGATATTTGAGCACCAAGTTAAAGTCATTATTCTTCTACAGCCAACAC
CTTTACTTCCTAAGTGATCTCATCTTCCTTTGTACTATATAATTTGATTT
AAGGTCCCAGGCTGCTATGTAGTTGAAGATAATCTTGAACTTATGATCTT
CCTGTCACTGCCTGCTGAGTTCTGGTACTACAGGTTTGCATGTCCAGGTT
TATTCAATGCTAATTCAAACTAAGAGCTTCTTATGTATTAGGCAAGGATT
CTACCAACTAAAACACACCCCTAATTTAGAGTTGATCTAATCACTTAAAT
TTTAAAAATTTAGNTGCAGATAGAGTATATAACCTAAGAAGAAAGAAAGG
TATTAAGAAATTTTTATTTTCTTTTAAGAAAGGGTTATTTATTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_i05.g1 MSMg01no366_i05.g1 CHROMAT_FILE:
MSMg01no366_i05.g1 PHD_FILE: MSMg01no366_i05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:23 2005
         (501 letters)



>mm_chr17_57740495_57741394
          Length = 900

 Score =  868 bits (449), Expect = 0.0
 Identities = 498/537 (92%), Gaps = 37/537 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   taggttattcctcttataaatctcatgttgtacttatcttgtgacttttgcttgaactac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 taggttattcctcttataaatctcatgttgtacttatcttgtgacttttgcttgaactac 224

                                                                       
Query: 61  agaaaccagagaaacagacttctataatgtaaaaatacacataactccattggcctttct 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 225 agaaaccagagaaacagacttctctaatgtaaaaatacacataactccattggcctttct 284

                                                                       
Query: 121 atactttatttgaaggaagcactgggtttaccactcagttcttcatttcagacaagtgat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 285 atactttatttgaaggaagcactgggtttaccactcagttcttcatttcagacaggtgat 344

                                                                       
Query: 181 catgtagccagagatgcctgagtcagttgtttctctctct-------------------- 220
           ||||||||||||||||||||||||||||||||||||||||                    
Sbjct: 345 catgtagccagagatgcctgagtcagttgtttctctctcttctctctctctctctctctc 404

                                                                       
Query: 221 -----ctctctctctctctctctctctctctctctcccc-----------ctctgatgtg 264
                ||||||||||||||||||||||||||||||||||           ||||||||||
Sbjct: 405 tctctctctctctctctctctctctctctctctctcccctctctctctccctctgatgtg 464

                                                                       
Query: 265 ttgtgatatttgagcaccaagttaaagtcattattcttctacagccaacacctttacttc 324
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ttgtgatatt-gagcaccaagttaaagtcattattcttctacagccaacacctttacttc 523

                                                                       
Query: 325 ctaagtgatctcatcttcctttgtactatataatttgatttaaggtcccaggctgctatg 384
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ctaagtgatctcatcttcctttgtactatataatttgatttaaggtcccaggctgctatg 583

                                                                       
Query: 385 tagttgaagataatcttgaacttatgatcttcctgtcactgcctgctgagttctggtact 444
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tagttgaagataatcttgaacttatgatcttcctgtcactgcctgctgagttctggtact 643

                                                                    
Query: 445 acaggtttgcatgtccaggtttattcaatgctaattcaaactaagagcttcttatgt 501
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 acaggtttgcatgtccaggtttattcaatgctaattcaaactaagagcttcttatgt 700


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 900
Length adjustment: 10
Effective length of query: 491
Effective length of database: 890
Effective search space:   436990
Effective search space used:   436990
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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