BAC Information

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BAC

Clone NameMSMg01-367K24
Chromosome17 (Build37)
Map Location 6,249,616 - 6,249,997
singlet/doubletsinglet
Overlap genenone
Upstream geneArid1b, 5730437N04Rik, Ldhal6b, LOC100040282, LOC666919, LOC100040312, Zdhhc14, 3300005D01Rik, LOC100040342, LOC100040352, Snx9, LOC666951, Synj2, Serac1, Gtf2h5, 2210038L17Rik, LOC545184, Tulp4
Downstream geneEG433058, Tmem181, LOC100040453, LOC100040471, Dynlt1, LOC547127, LOC100040488, LOC100040500, LOC100040531, LOC100040525, LOC100040563, LOC100040546, LOC100040536, LOC100040556, LOC100040603, LOC100040596, LOC100040631, LOC100040616, Sytl3, Vil2, LOC100040654, Rshl2b, 1700122H20Rik, Tagap1, Rnaset2b, Gm1604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367K24.T7 (MSMg01no367_k24.b1)MSMg01-367K24.TJ (MSMg01no367_k24.g1)
ACCAG475096AG475097
length799755
length of high quality
(start - end)		413 (46 - 458)382 (57 - 438)
definitionCHROMAT_FILE: MSMg01no367_k24.b1 PHD_FILE: MSMg01no367_k24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:55 2005CHROMAT_FILE: MSMg01no367_k24.g1 PHD_FILE: MSMg01no367_k24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:55 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGC
GGAATTCAGTACTGCCCCTGGTATTACACTATCTCTTTGAGTAAAAGTTA
GGTCACTGCCCTTCACAGGAATTTACCATCACTAAGGAAGAAAGAAGTTT
CTGACCGTAGGAGAAACCAGAATAGATATTTAGAATTATAGCTGAGTTAC
ACCTATATAGAGGAATTTACAATGGTTTAGGAAGTAGATCCAGCTGTGGT
TTTAGAGTATTGCATTATTCATGAGATGGTTAGCTAGAACGGAACTCCCT
AGTTAGAACCATGACTTGGGTGTGAAAGCCCTTGCCCTAGGAGTGAAAAG
TTCTCACACCTGGCGTCTAAGACTATAGCTGACCTTAGACAGGGCTGACT
CTGTCTCAGTTATTTTATTGCCCAGTTCCTGCCAGTCTTTGCGTTTTCAT
TCCTCTGTTCTGTGTAAGAGTCATTAAGCATCCGGTTACCTCATTTGTAC
CTTGTGGGTATGTCACCCAACTACCTTGTTGTCTTCTGCATAAAAAGTCT
GATGTTCGATTTGACCAATTACATTCTGAATCCCCACCTAATTCTCCTGG
GGGGGTGTCTGGNCTGCCATTCACCCACGTTTTGCGCCCCCGAGTCCAGA
AGACCTGGTCTCCTCATAAACTGGGAACCCCAAGTGCCGGGGAGTTTTCC
CCTATGGAACGGGGGTTCTCCACAAAGTGTGGTTTGTTCTCTTGTCCCGG
TTGGTGTTTACAATGGGGGTTGTGCCTTTTTTCTTATTTTTCTCCTGCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCCTGTGCCTCTGCCTCCTCTGAGCTGATATTACAGGCAGGCTAC
ATGAGTGCTGGAGACTTGAACTCAGGTCCTCATGCTTGCATGGCAGGCAC
TTACTTCACCCACTGAACCTTCTCTCCAGCCAGTTTGTTTAGTTTTAAGA
TGGTCTGGCTATGTTGCTGAGGTTAGTGTAGAACTCTCAGCCTCAAATGA
TTCTCCTCCCTAAGCAGATAGATGGATGGAACTGTAGGTAGATGACACCG
TGCCTGGTTCTATTTTTTATTGAAACTTGGGGCAGCACTGGGGAACTTTA
ATGTTACTTCAGGCTCAGTAAACATCAAATTATGCCCCAGAGCATCGGAA
GCACTAAAAAGTCTACTCCAAGCAGGAGTTCATGCCTTAGAGTTATGTTC
ACACAGGCCAGCCAGAAGGCTCCCCTTTCAGAACGGCCGGTTTTTTTTTT
TTCCCTAAAAAATCCATAGGGCTAACAAAAATCCGAAAAAAGCCCTAATT
TTTAAAACCCTTTAGCCCCTGCTTGAACAAGGGATTTATGAAAATTGTTC
CATTTGGGGCACTCCCCCTTTAAAAAATTTTCTACCCCCCCTGCTGTTGA
TGGCGTATTTTTAAAACAACCTACCCTTTCGGCTTTAATGTTTTCTTTAC
ATTTCCTAATCCTTAAAAAATGAATTAGCGTTTCTCTTGCATCTTCATAA
TCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_k24.g1 MSMg01no367_k24.g1 CHROMAT_FILE:
MSMg01no367_k24.g1 PHD_FILE: MSMg01no367_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:55 2005
         (382 letters)



>mm_chr17_6249416_6250197
          Length = 782

 Score =  723 bits (374), Expect = 0.0
 Identities = 380/382 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgtgcctctgcctcctctgagctgatattacaggcaggctacatgagtgctggagact 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 cctgtgcctctgcctcctctgagctgacattacaggcaggctacatgagtgctggagact 260

                                                                       
Query: 61  tgaactcaggtcctcatgcttgcatggcaggcacttacttcacccactgaaccttctctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaactcaggtcctcatgcttgcatggcaggcacttacttcacccactgaaccttctctc 320

                                                                       
Query: 121 cagccagtttgtttagttttaagatggtctggctatgttgctgaggttagtgtagaactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagccagtttgtttagttttaagatggtctggctatgttgctgaggttagtgtagaactc 380

                                                                       
Query: 181 tcagcctcaaatgattctcctccctaagcagatagatggatggaactgtaggtagatgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagcctcaaatgattctcctccctaagcagatagatggatggaactgtaggtagatgac 440

                                                                       
Query: 241 accgtgcctggttctattttttattgaaacttggggcagcactggggaactttaatgtta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accgtgcctggttctattttttattgaaacttggggcagcactggggaactttaatgtta 500

                                                                       
Query: 301 cttcaggctcagtaaacatcaaattatgccccagagcatcggaagcactaaaaagtctac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 cttcaggctcagtaaacatcaaattatgccccagagcatcggaagcactaaaaagtcaac 560

                                 
Query: 361 tccaagcaggagttcatgcctt 382
           ||||||||||||||||||||||
Sbjct: 561 tccaagcaggagttcatgcctt 582


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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