BAC Information

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BAC

Clone NameMSMg01-368G12
Chromosome17 (Build37)
Map Location 61,089,757 - 61,287,001
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043549
Downstream geneLOC433129, EG620725, LOC100043560
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368G12.T7 (MSMg01no368_g12.b1)MSMg01-368G12.TJ (MSMg01no368_g12.g1)
ACCAG475641AG475642
length752736
length of high quality
(start - end)		548 (61 - 608)505 (68 - 572)
definitionCHROMAT_FILE: MSMg01no368_g12.b1 PHD_FILE: MSMg01no368_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:50 2005CHROMAT_FILE: MSMg01no368_g12.g1 PHD_FILE: MSMg01no368_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,286,497 - 61,287,001)(61,089,757 - 61,090,261)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTATCTGACTGAGACTATGAGGACCTTAACAGAAAAGATAA
GTGAGCAAGAAGGAAGTTCTGTGACATTTTTGAATACTGGCATCTGAGTT
GTGAGGAAAAAATGATACCGAGATCTCGATTTCTGTCCCTACTACTTCTC
TGAGCTTTACTATTAGGTCAGCATTACAGAATAAAGTCAACCCCTCAGCA
TAATCTCACCTCGCACATTGTCATGTTCCATGCTTATTCTTCCTGTTTAC
AAACCAATTCTGGAAGTATGTTCAGAAGTGACTTGTTTGGCAAACTTGGA
GGGATCAATTAAGAAAAAACAAAACAAAACAAAACATGAAGTATCAAACT
ATCTACAAGAGCCATCTGCTGTTTATAAAAACATTTATACTTTAATAGTA
TGGACAAGCTTATATAAGGATTCATAGAAAGAGGAAACATTTCAGAGGAA
TTTCTTTGTATAGCTAGAATATTTTCTAATATGTTTTGCAACTCAACCAT
CAAGGCATTATGTATGTTAAGAACATGTTTGATTGCTTGGCTATGCCGCT
ACGCCTAGTGAATAGCTCATTTACTTTCAGAACAACCTTATAAGCCTTGA
ATTTCTGTATCAGCAACCAATAAAAGAACTGAGATATTAAATTTTAATTG
CCTTTAAAAAGATAGATCCATGAGTAATGTGAAACATATATATTTATAAT
TA

TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTCATTCTTTTCCCATGCCAAGTTTTCTGTGTT
GTTCAATAAATACAGAGTGAAGCCCTTTGTTAGGGACATCCAGAAGACAC
GGACTGGCAATGGGAGCAGGCCGAGATAAAATGCACAGAACAGAGAAATA
ACAGACAGGTCACAGGCTACAAACCTCAGACAGATGGGAGGCACAAGGAG
AGAATGGAAGAATTCAAATGTGGGCTGACTCTTGGTCTAAAGTACTCCAG
GAGGAAGTCTCTTTCTCCGTTTTCATCCTTAATGCAACAACAATGCACCG
AACTACATCTCTATACCTACTGAAGATATGAAATCAAACAATAGGCATTC
CCTATGTTCCCAGTAAGCTATGTGCTCCCATCAAATCATTCTTGAAAGAC
AGAGACCTCATTTCTAAGTGAGCACTTACCTCCCATGGGCCTTTTCATTT
CTCACTGTCAACTCATACAAACCGTGTGGACAGTAGGTGCAGCCTTGTGT
TGATGGCTGTGAGCCTTTCTTCACAGAGAACATGCCTGTGCTGTCCAATG
GGAACAGAAGGAAAAAGGCATTGTGGGAACTTTATTTCTCTTTCTCGGAT
TTCCGACCCGAAAAAGCAAAATGAACCAACCCCGGTTCGTTCACCTTGGT
ACTGTTTAAACATGTTGGATGGAGGTTCCCCCGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_g12.b1 MSMg01no368_g12.b1 CHROMAT_FILE:
MSMg01no368_g12.b1 PHD_FILE: MSMg01no368_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:50 2005
         (548 letters)



>mm_chr17_61286497_61287444
          Length = 948

 Score =  915 bits (473), Expect = 0.0
 Identities = 497/505 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatctgactgagactatgaggaccttaacagaaaagataagtgagcaagaaggaagttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tatctgactgagactatgaggaccttaacagaaaagataagtgagcaagaaggaagttct 446

                                                                       
Query: 61  gtgacatttttgaatactggcatctgagttgtgaggaaaaaatgataccgagatctcgat 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtgacatttttgaatactggtatctgagttgtgaggaaaaaatgataccgagatctcgat 386

                                                                       
Query: 121 ttctgtccctactacttctctgagctttactattaggtcagcattacagaataaagtcaa 180
           ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 385 ttccgtccctactacttctctgagctttactcttaggtcagcattacagaataaagtcaa 326

                                                                       
Query: 181 cccctcagcataatctcacctcgcacattgtcatgttccatgcttattcttcctgtttac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cccctcagcataatctcacctcgcacattgtcatgttccatgcttattcttcctgtttac 266

                                                                       
Query: 241 aaaccaattctggaagtatgttcagaagtgacttgtttggcaaacttggagggatcaatt 300
           ||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||
Sbjct: 265 aaaccaattctggaagtatgtccagaagcgacttgtttggaaaacttggagggatcaatt 206

                                                                       
Query: 301 aagaaaaaacaaaacaaaacaaaacatgaagtatcaaactatctacaagagccatctgct 360
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 205 aagaaaaaacaaaacaaaacaaaacatgaagtatcaaacgatctacaagagccatctgct 146

                                                                       
Query: 361 gtttataaaaacatttatactttaatagtatggacaagcttatataaggattcatagaaa 420
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 145 gtttataaaaacatttatactttactagtatggacaagcttatataaggattcatagaaa 86

                                                                       
Query: 421 gaggaaacatttcagaggaatttctttgtatagctagaatattttctaatatgttttgca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  gaggaaacatttcagaggaatttctttgtatagctagaatattttctaatatgttttgca 26

                                    
Query: 481 actcaaccatcaaggcattatgtat 505
           |||||||||||||||||||||||||
Sbjct: 25  actcaaccatcaaggcattatgtat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no368_g12.g1 MSMg01no368_g12.g1 CHROMAT_FILE:
MSMg01no368_g12.g1 PHD_FILE: MSMg01no368_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:50 2005
         (505 letters)



>mm_chr17_61089557_61090461
          Length = 905

 Score =  938 bits (485), Expect = 0.0
 Identities = 500/505 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcattcttttcccatgccaagttttctgtgttgttcaataaatacagagtgaagccctt 60
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcattcttttcccatgccgtgttttctgtgttgttcaataaatacagagtgaagccctt 260

                                                                       
Query: 61  tgttagggacatccagaagacacggactggcaatgggagcaggccgagataaaatgcaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttagggacatccagaagacacggactggcaatgggagcaggccgagataaaatgcaca 320

                                                                       
Query: 121 gaacagagaaataacagacaggtcacaggctacaaacctcagacagatgggaggcacaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaacagagaaataacagacaggtcacaggctacaaacctcagacagatgggaggcacaag 380

                                                                       
Query: 181 gagagaatggaagaattcaaatgtgggctgactcttggtctaaagtactccaggaggaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagagaatggaagaattcaaatgtgggctgactcttggtctaaagtactccaggaggaag 440

                                                                       
Query: 241 tctctttctccgttttcatccttaatgcaacaacaatgcaccgaactacatctctatacc 300
           |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 441 tctctttctccgttttcatccttaatgcaacatcaaagcaccgaactacatctctatacc 500

                                                                       
Query: 301 tactgaagatatgaaatcaaacaataggcattccctatgttcccagtaagctatgtgctc 360
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 tactgaagatatgaaatcaaacaataggcgttccctatgttcccagtaagctatgtgctc 560

                                                                       
Query: 361 ccatcaaatcattcttgaaagacagagacctcatttctaagtgagcacttacctcccatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccatcaaatcattcttgaaagacagagacctcatttctaagtgagcacttacctcccatg 620

                                                                       
Query: 421 ggccttttcatttctcactgtcaactcatacaaaccgtgtggacagtaggtgcagccttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggccttttcatttctcactgtcaactcatacaaaccgtgtggacagtaggtgcagccttg 680

                                    
Query: 481 tgttgatggctgtgagcctttcttc 505
           |||||||||||||||||||||||||
Sbjct: 681 tgttgatggctgtgagcctttcttc 705


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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