BAC Information

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BAC

Clone NameMSMg01-369N08
Chromosome17 (Build37)
Map Location 42,391,357 - 42,598,764
singlet/doubletdoublet
Overlap geneLOC627626
Upstream geneLOC627577
Downstream geneOpn5, Gpr115, Gpr111, EG546797, Cd2ap, Tnfrsf21, LOC100043770, Gpr110, Gpr116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369N08.T7 (MSMg01no369_n08.b1)MSMg01-369N08.TJ (MSMg01no369_n08.g1)
ACCAG476724AG476725
length767768
length of high quality
(start - end)
181 (61 - 241)240 (59 - 298)
definitionCHROMAT_FILE: MSMg01no369_n08.b1 PHD_FILE: MSMg01no369_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:40 2005CHROMAT_FILE: MSMg01no369_n08.g1 PHD_FILE: MSMg01no369_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,391,357 - 42,391,537)(42,598,525 - 42,598,764)
sequence
GCGTCCGCTATACGACTCACTATTTCCAGAGGATCCGCGGAATTCAATTA
ATTTCCAGAGAATGATTCAGGGCCCTTCAGTGTGGAACAAGAGGTCACAG
TAAACAATGACCTCACAGTGAGAAATATTAATGATGCTTATTTAAATTAT
ACCATCTAGTAGTTTTTGTTAAGAAGTTGAACTTACTTGCATAAAACTGA
TTTTATTCCTTATGAATGTAAATAAAAACAAATTTCAAAACTAAAAAAAA
AACAAACCCAAAAAAGTATTGAATGATAAATCAGGTAATTATTAAGTCTC
AGATGACATATTTAATAACAAGCCTCTACACTCTTGGTGATTATCTGTAG
GTGGTAAGGTGATCATTACAAAATTCTCATCTTTTTTCCTTACTTTTCAA
AAAAGTCATGCGTTCTTTTACCAGTGACTCTGTATAATCACAACTATTGT
ATATGATGTTTGTACAATTTTTGCGCCATATTCTCTGTATCATATTTATC
CCCTTGTATTTTTCTCCTCCTTATCTGTTCCCGTTTCTATTTTATCTGTT
TATTGTCCTCTATCTCCCGATTAATTTGTTTTTTTGTCCCCCTTTCTTCT
TTTTTTTCAATTATTGTCCCCTTATCCATTTTTCTTATTTTTTTCCCCTT
TTTTTCTTTTCTTCTCCCCTTTTTTTTCTTTTTTTTTTCTTTTTTTCCAT
CTTTCTCTTTTTTTTTTATTTTCACCCTTTTCTCTATTTATCTCTCACTT
TTTTTTCTTTTTTTTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCATGTTAGTTTCTTGAAGATGGCCAGGCTTGGAGACATATCTG
GGGACAAGAAATCTCATCTAAGGAACTGCCTTCATCAGACTGATTTTTTG
TGGGAGGGTTTAGCCTACTATTAGCAGAGTCATTTAGCACGAGCAAGTCA
TGAGGAGCAATCCAGTAATCAGCGCTACTCCATGTTCTCTGCTTCAGTTC
CTGCCTCTAGGTTCCTGCCTTGAGTTCCTACCCTGGCTTCCCTAGATGTA
TTGTTTTTCTAAAATATGAAGCATAGCCTTTCCTCCTCAAGTTGCTTTTA
ATAATAGTGTCTATCACATGCTGTAGAGAGCAAGCTATGACATGCTCTCC
AGTAGATGAAATGAACATTCCTGTTATTTTATTTCTGTTACACTTTTTAC
TTGTATCATACAGGTCCTCTTCTATTTCTTGACTTGCGCTTGCTACTGCT
TTTTCTGGTCATTTTTTTACACTTTTTTTACCTGTTTTTATCCTTCCCAT
CTATTATTGCATTTTTTCCCCTTCCTTTTTTCCTGAATTGTTCACCTTCT
TTTGGCTTCTTGACCTTGCGCCCCTTACCTTTGTTCTGCTTTTTCGCCTT
GTCTCTCTCTTCACCTTATCCCTTTCACTCATATGCCCTCGCCCTCTTGT
CCTCTAATCCTCCGCTCCTTTTTTTTCTTTCCTCCCCCTTTACTTTTCCG
GTCGACTTTTTGTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_n08.b1 MSMg01no369_n08.b1 CHROMAT_FILE:
MSMg01no369_n08.b1 PHD_FILE: MSMg01no369_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:40 2005
         (181 letters)



>mm_chr17_42391157_42391737
          Length = 581

 Score =  350 bits (181), Expect = e-101
 Identities = 181/181 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgattcagggcccttcagtgtggaacaagaggtcacagtaaacaatgacctcacagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgattcagggcccttcagtgtggaacaagaggtcacagtaaacaatgacctcacagtg 260

                                                                       
Query: 61  agaaatattaatgatgcttatttaaattataccatctagtagtttttgttaagaagttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaatattaatgatgcttatttaaattataccatctagtagtttttgttaagaagttga 320

                                                                       
Query: 121 acttacttgcataaaactgattttattccttatgaatgtaaataaaaacaaatttcaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttacttgcataaaactgattttattccttatgaatgtaaataaaaacaaatttcaaaa 380

            
Query: 181 c 181
           |
Sbjct: 381 c 381


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 581
Length adjustment: 8
Effective length of query: 173
Effective length of database: 573
Effective search space:    99129
Effective search space used:    99129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no369_n08.g1 MSMg01no369_n08.g1 CHROMAT_FILE:
MSMg01no369_n08.g1 PHD_FILE: MSMg01no369_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:40 2005
         (240 letters)



>mm_chr17_42598433_42599072
          Length = 640

 Score =  418 bits (216), Expect = e-121
 Identities = 234/240 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgttagtttcttgaagatggccaggcttggagacatatctggggacaagaaatctcatc 60
           |||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 332 atgttaatttcttgaagatggccaggcttgaagacatatctggggaaaagaaatctcatc 273

                                                                       
Query: 61  taaggaactgccttcatcagactgattttttgtgggagggtttagcctactattagcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 taaggaactgccttcatcagactgattttttgtgggagggtttagcctactattagcaga 213

                                                                       
Query: 121 gtcatttagcacgagcaagtcatgaggagcaatccagtaatcagcgctactccatgttct 180
           | |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 212 gccatttagcacgagcaagtcatgaggagcaatccagtaagcagcgctactccatggtct 153

                                                                       
Query: 181 ctgcttcagttcctgcctctaggttcctgccttgagttcctaccctggcttccctagatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 ctgcttcagttcctgcctctaggttcctgccttgagttcctaccctggcttccctagatg 93


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)