Query= MSMg01no370_a15.b1 MSMg01no370_a15.b1 CHROMAT_FILE:
MSMg01no370_a15.b1 PHD_FILE: MSMg01no370_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:57 2005
(492 letters)
>mm_chr17_15849690_15850582
Length = 893
Score = 814 bits (421), Expect = 0.0
Identities = 467/495 (94%), Gaps = 23/495 (4%)
Strand = Plus / Plus
Query: 5 gaattcctgaggaatattgtcatgagccatgctaaagagaggctaggtaaattttatttt 64
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 205 gaattcctgaggaatattgtcatgagccatgctagagagaggctaggtaaattttatttt 264
Query: 65 gctagaaacacacacattggcaaagtgta-------attgttgattttctgattgaacca 117
|||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 265 gctagaaacacacacattggcaaa----acacacacattgttgattttctgattgaacca 320
Query: 118 agcaaggtgcgcacgcagggcactttgtgtcacaggaaatttcaaaacacattcccacaa 177
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcaaggtgc--acgcagggcactttgtgtcacaggaaatttcaaaacacattcccacaa 378
Query: 178 aaccccattgctatccacagtgttacggttttgctttctgcgtaggaaaataaggtttac 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aaccccattgctatccacagtgttacggttttgctttctgcgtaggaaaataaggtttac 438
Query: 238 agttttaaaatgttatttttatgtgtgtgtttgtatgccccattcgtatgcctgactgag 297
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 439 agttttaaaatgttatttttatgtgtgtgtttgtatgccacattcgtatgcctgactgag 498
Query: 298 gaggtataattggggtgttggatcctgcagagttacaggcagttgcatgcaacataacgt 357
|||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 499 gaggtataattggggtgttggatcctgcagagtt----------gcatgcaacataacat 548
Query: 358 ggtgctaggaactgaatttgggtcctctgcaagagcagcaagtccttttagccacttgat 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ggtgctaggaactgaatttgggtcctctgcaagagcagcaagtccttttagccacttgat 608
Query: 418 catctcttttagctcctgtaacaattttaaaactcactgttttaaagccatgactatgaa 477
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 catctcgtttagctcctgtaacaattttaaaactcactgttttaaagccatgactatgaa 668
Query: 478 tcctgggagctgact 492
||||||||||||||
Sbjct: 669 gcctgggagctgact 683
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 893
Length adjustment: 10
Effective length of query: 482
Effective length of database: 883
Effective search space: 425606
Effective search space used: 425606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no370_a15.g1 MSMg01no370_a15.g1 CHROMAT_FILE:
MSMg01no370_a15.g1 PHD_FILE: MSMg01no370_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:57 2005
(501 letters)
>mm_chr17_16042680_16043580
Length = 901
Score = 864 bits (447), Expect = 0.0
Identities = 483/501 (96%), Gaps = 12/501 (2%)
Strand = Plus / Minus
Query: 1 tctgcattggctttaaatcttggagaatatacctttgctaaacaaagaaccaagtttagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 tctgcattggctttaaatcttggagaatatacctttgctaaacaaagaaccaagtttagt 800
Query: 61 tagtttggtaaaatgatgctagaaatggatgcaatttccttgccaataataataatgatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 tagtttggtaaaatgatgctagaaatggatgcaatttccttgccaataataataatgatg 740
Query: 121 acgataatataataataataataataataataataataatgataataatatggcagcact 180
|||||||||| | |||||||||||||| ||| |||||||||||||||||||
Sbjct: 739 acgataatat--------t-ataataataataatgata---ataataatatggcagcact 692
Query: 181 gaactagagtccctagtatatgtgcctcagtccatgagactcgcaataaggccacttcca 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 691 gaactagagtccctagtatatgtgcctcagtccatgagactcacaataaggccacttcca 632
Query: 241 aagataatttactttctccaaaaatgctcttaaagaaacataactatagaagcaattcat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 aagataatttactttctccaaaaatgctcttaaagaaacataactatagaagcaattcat 572
Query: 301 ataatgatggaattcgacaaatgagaaggcagtggctgtatacaaggaagatagagatct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ataatgatggaattcgacaaatgagaaggcagtggctgtatacaaggaagatagagatct 512
Query: 361 gcagcaaacaaggtaagtaatggctatgaaatgaaatctacaggattggcaactgtatgg 420
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 511 gcagcaaacaaggtaagtcatggctatgaaacgaaatctacaggattggcaactgtatgg 452
Query: 421 agacctgagacaaggtcacattctacatctggaagctgaacaactatatccatacagaga 480
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 451 agacctgagacaaggtcacaatctacatctgcaagctgaacaactatatccatacagaga 392
Query: 481 aagatccagcagggatttgga 501
|||||||||||||||||||||
Sbjct: 391 aagatccagcagggatttgga 371
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
