XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAGCCA
GCCATAGAGAACAGCGGAAGAGACACATAGGGAAGGAACTTTAATATGCA
AAAGAAATGCAAGGGAAAGCCAGGCTGGAGCTTCATCACAATAGACCTGG
AGAGAAAGTAGTTGCTGCACCAGCCTGGGGAACTGAGCTCAGGTCTTCAG
AGCTTCCATCAGAAGCCTGGCATGGCACCTTGCTTCTGTAAGCCTGGCAC
AGAGGAGGGCAGGGACGGGGAGACCCCTGGAGCTCACCAGGCAGCCAGCC
TAGCCATACCTGTGAGCCTCAGGTCCCGTAAGAGACAACCGTCTCAAAAG
ACAAGGTGGAGAGTGACTAAAGAAGACAGGTGACATAGACTTCTGTCCTC
TACGCGAATGCTCTGAGTTCCTGCAAAGAAGCTGTCTACACAGGCTAACT
CACTGATTATAACGCCAGTGATATGGAGAGGCTGGAGTGTTGCAGGAAGA
GTATCCTTCAGTCTAACACGAGTCATCCCTCACACAATTCTGTACCACAG
CTTGTCTCCCAATAAGAAAGATAAAAGCCCTCTGTAACGTACTACTTACT
TACTTTAAAAGTATTCCCCCTCCATTGCATGGTCTCAAGACTGCACATGT
TACCAATTTCCTACCTATCTTATACCCCACCTTTTCTGCATGTTTCCCAC
CTACGGCCCTTTTTCTGTCACCGCTCTTCATATTCCTCCCGTTCCTATCC
CTTCCTCTTCCCCTTATATCACCGTCTACCCTATTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCCATCCACTGTGAGAGCCTCTTCAGAGTCCAGTG
TGCACTGGAGCAAGCAAGAAAAGAGCCTTCAGTACTTTATGGCTTTCTAC
TTATAAGTGAAGCTGCCGGGCTGACCTTCTGCAGCTTATCACTACTCAGG
CAAGGTTGTACGGTGTGCTCTCAGCTTTCCAGGGCCTTGAGACATGTTCC
TGCTTGTCCCTCATGCAAGCCTCTTGCTGTTCCACCCTGTGACCCATAAG
ATACAGCCCTGTGGTACTGCCAAAATGTGCCCAGCTGCAGAGCTGTTTGC
CATTTGTTAATCTCTCAGATGAGGAGCTGAGCTGACAGAGTGGGCTAGGC
CAGCCTCTGGAGTATCCTCAAGGCTGTGAATTGTAAGGCCCTGGGCAGTC
CCAGCCAGACTAGCACTGAGGGCTTGCACCAATAGATTCTGTCCACTTCT
CGCTGGAGCAGCTGAACAGGGAGCCTGAGGCTATGCATGCAGGTCAAGTG
CACATTAGACTGTCCAGGGACCAAGGTTTGTTGAGGGCCTTAAAACCACC
GCTGGCCCCTCAAGGGATGGGCAATTTCCTGCGGGCGATACTCGCCACCT
AAAACGTCTTGTTCTTTTTTCCTCTCACCTACCTTATTTCTCCCTTTTTT
TTGCACTTTTGTTCTTTTTTACCTTTTCGGTTGTGGCGTTCCTCTCCTAT
CCCCCCTCTTCTAATCTCTCTTTTTTCCTTACCCCCTTTTTTCCCTTATA
T

Query= MSMg01no370_m19.b1 MSMg01no370_m19.b1 CHROMAT_FILE:
MSMg01no370_m19.b1 PHD_FILE: MSMg01no370_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:57 2005
         (430 letters)



>mm_chr17_49975778_49976607
          Length = 830

 Score =  748 bits (387), Expect = 0.0
 Identities = 414/423 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcagccagccatagagaacagcggaagagacacatagggaaggaactttaata 63
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcagccagccagagagaacagcggaagagacacatagggaaggaactttaata 263

                                                                       
Query: 64  tgcaaaagaaatgcaagggaaagccaggctggagcttcatcacaatagacctggagagaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgcaaaagaaatgcaagggaaagccaggctggagcttcatcacaatagacctggagagaa 323

                                                                       
Query: 124 agtagttgctgcaccagcctggggaactgagctcaggtcttcagagcttccatcagaagc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agtagttgctgcaccagcctggggaactgagctcaggtcttcagagcttccatcagaagc 383

                                                                       
Query: 184 ctggcatggcaccttgcttctgtaagcctggcacagaggagggcagggacggggagaccc 243
           |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 384 ctggcatggcaccttgcttctgtaagcctggcacggaggagggcagggacagggagaccc 443

                                                                       
Query: 244 ctggagctcaccaggcagccagcctagccatacctgtgagcctcaggtcccgtaagagac 303
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctggagctccccaggcagccagcctagccatacctgtgagcctcaggtcccgtaagagac 503

                                                                       
Query: 304 aaccgtctcaaaagacaaggtggagagtgactaaagaagacaggtgacatagacttctgt 363
           |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 504 aaccgtctcaaaagacaaggtggagagtgactgaagaagacaggtgacgtagacttctgt 563

                                                                       
Query: 364 cctctacgcgaatgctctgagttcctgcaaagaagctgtctacacaggctaactcactga 423
           ||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 564 cctctactcgcatgctctgagttcctgcaaaggagctgtctacacaggctaactcactga 623

              
Query: 424 tta 426
           |||
Sbjct: 624 tta 626


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space:   345641
Effective search space used:   345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no370_m19.g1 MSMg01no370_m19.g1 CHROMAT_FILE:
MSMg01no370_m19.g1 PHD_FILE: MSMg01no370_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:57 2005
         (369 letters)



>mm_chr17_50119070_50119838
          Length = 769

 Score =  675 bits (349), Expect = 0.0
 Identities = 364/369 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccatccactgtgagagcctcttcagagtccagtgtgcactggagcaagcaagaaaagag 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tccacccactgtgagagcctcttcagagtccagtgtgcactggagcaagcaagaaaagag 510

                                                                       
Query: 61  ccttcagtactttatggctttctacttataagtgaagctgccgggctgaccttctgcagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ccttcagtactttatggctttctacttataagtgaagctgccgggctgaccttctgcagc 450

                                                                       
Query: 121 ttatcactactcaggcaaggttgtacggtgtgctctcagctttccagggccttgagacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ttatcactactcaggcaaggttgtacggtgtgctctcagctttccagggccttgagacat 390

                                                                       
Query: 181 gttcctgcttgtccctcatgcaagcctcttgctgttccaccctgtgacccataagataca 240
           |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 389 gttcctccttgtccctcatgcaagcctcttgctgttccaccctgtgactcataagataca 330

                                                                       
Query: 241 gccctgtggtactgccaaaatgtgcccagctgcagagctgtttgccatttgttaatctct 300
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 329 gccctgtggtactgccaaaatgcgcccagctgcagagctgtttgccatttgttaatctct 270

                                                                       
Query: 301 cagatgaggagctgagctgacagagtgggctaggccagcctctggagtatcctcaaggct 360
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 cagatgaggagatgagctgacagagtgggctaggccagcctctggagtatcctcaaggct 210

                    
Query: 361 gtgaattgt 369
           |||||||||
Sbjct: 209 gtgaattgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)