BAC Information

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BAC

Clone NameMSMg01-372C03
Chromosome17 (Build37)
Map Location 14,265,256 - 14,461,498
singlet/doubletdoublet
Overlap geneDact2, Smoc2
Upstream geneTcp10c, Ttll2, Unc93a, Smok2a, Smok2b, LOC667359, LOC100041352, LOC667372, LOC667384, Smok4a, Tcte2, Mllt4, LOC100041464, EG635895, EG664821, EG664831, 4930488N24Rik
Downstream geneLOC664856, Thbs2, LOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3, C330048F19, LOC664953
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372C03.T7 (MSMg01no372_c03.b1)MSMg01-372C03.TJ (MSMg01no372_c03.g1)
ACCAG478468AG478469
length718742
length of high quality
(start - end)
245 (67 - 311)382 (78 - 459)
definitionCHROMAT_FILE: MSMg01no372_c03.b1 PHD_FILE: MSMg01no372_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:49 2005CHROMAT_FILE: MSMg01no372_c03.g1 PHD_FILE: MSMg01no372_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,461,256 - 14,461,498)(14,265,256 - 14,265,632)
sequence
TCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAATCTCGACACCTCTGGCCCTGCCATTATCCTTGGTCAAGGAA
TCAGAATCCTGGCCAACCTTCATCTACCTATTCCTCATACCCCAGACCAT
GTTCTGTCTAGTCATTCATTAAGCCAGATAGAAGAGCAAGCTGAACATGG
CATTCCCTCTGGCTGTGAGTGTCTTGCATGATGCAGAGTCCCATCTTTCC
TTTAGACTCAGAGCCTTAGATGAGGTTTCACACCAGGGAACATGACTGAT
GGGAAGACAATGTTGTTAACTTTGAGAAAATATCAAGTGTTCTGGAGCGA
GGAAAGCACAGCTGCCTGGAGCTCAGCTCCACTCTGCAGCCTGGAGTTCA
TGGACAAAGCTGTACCACGAGTTCTGGCCTTAAGGCTTTAGACATCTCAA
CAGTTGTGCAGCCTGCCTTACGCTGGTCACATACTGTCACCATGGGATAT
GGTCCCCATGTGGACAATGACACAGACTCTCCTTTGTTTTTCATTAGATA
TTTTCTTTATAGTCATTTCAAATGCTATCTTGAAAGTTCCCTATATCCTC
CCCCCGCCCTGCTTCCCTACTCCCGCTTCTTGGCCCTGGTATTCCGCTGT
ACTGGCCCATATAAAGTTTTGTACACCAAGATGCCTCTTTTCCCATAGAC
GGCCAACTAAAGCTATCC
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCATTGAATGGCCTCAAGCCATT
CAGTTTAACTTTTAAGACAAAGCTGTCTTTTTAAACCAAGTGATCAGGGA
AGACAGTGTTCTCATAATTCCTCAGAAAGGCTGAGACAGGGCTGCAGAAA
TAGGCAGAGCAACCTCCCTCTCAAGGCGAGGACTTGAGTTTGAATCCCCA
GAACCCCCATCAAAGTTGGGTGCAGCAGCAAAGTTTATAAACTCAGCATC
CCTGGGGTGGGGATGGGGGATGAGCAGGGGAGACAGGAGAGTCACAGAAA
CGTGGGACAGATGTTCTGGTGTGCAAGCATCTTACAAGAGATCTTGTCTG
AATGGAAAAGTGGAGGACCAGTTCTCAGGATTGCTTCTGATCATATGTGT
ATGTTTGGCGGGACATGATTGTACACAGGCCTACCAATACATATGCGTGT
GGATATGTACACATTCTTCCCCCCATTATTTATACTCCCCCTCTTCTCTA
TGACGTCTGAAATTTACCCTCCTACTACATTTGTACCTCTTCCCAGTGTT
TTCCTGCCGTTTTCCCTTTTTTGTTTTTCCCCCATTTTTTCCGCGCCACC
CATTTCCGCCTCTCTTTCCCCCTCCTTTTCCCCCCCCACCCTCTGTCGCC
CCCCCCCCCCCGCACTTTGTCTTTTCTTTCGCCGCCATCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_c03.b1 MSMg01no372_c03.b1 CHROMAT_FILE:
MSMg01no372_c03.b1 PHD_FILE: MSMg01no372_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:49 2005
         (245 letters)



>mm_chr17_14461054_14461698
          Length = 645

 Score =  455 bits (235), Expect = e-132
 Identities = 241/243 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   ctctggccctgccattatccttggtcaaggaatcagaatcctggccaaccttcatctacc 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctctggccctgccattatccttggtcaaggaatcagaatcctggccaaccttcatctacc 386

                                                                       
Query: 63  tattcctcataccccagaccatgttctgtctagtcattcattaagccagatagaagagca 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tattcctcataccccagaccatgttctgtctagtcattcattaagccagatagaagagca 326

                                                                       
Query: 123 agctgaacatggcattccctctggctgtgagtgtcttgcatgatgcagagtcccatcttt 182
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agctgaacatggcatttcctctggctgtgagtgtcttgcatgatgcagagtcccatcttt 266

                                                                       
Query: 183 cctttagactcagagccttagatgaggtttcacaccagggaacatgactgatgggaagac 242
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catttagactcagagccttagatgaggtttcacaccagggaacatgactgatgggaagac 206

              
Query: 243 aat 245
           |||
Sbjct: 205 aat 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no372_c03.g1 MSMg01no372_c03.g1 CHROMAT_FILE:
MSMg01no372_c03.g1 PHD_FILE: MSMg01no372_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:49 2005
         (382 letters)



>mm_chr17_14265052_14265833
          Length = 782

 Score =  698 bits (361), Expect = 0.0
 Identities = 373/377 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   tgaatggcctcaagccattcagtttaacttttaagacaaagctgtctttttaaaccaagt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tgaatggcctcaagccattcagtttaacttttaagacaaagctgtctttttaaaccaagt 264

                                                                       
Query: 65  gatcagggaagacagtgttctcataattcctcagaaaggctgagacagggctgcagaaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatcagggaagacagtgttctcataattcctcagaaaggctgagacagggctgcagaaat 324

                                                                       
Query: 125 aggcagagcaacctccctctcaaggcgaggacttgagtttgaatccccagaacccccatc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggcagagcaacctccctctcaaggcgaggacttgagtttgaatccccagaacccccatc 384

                                                                       
Query: 185 aaagttgggtgcagcagcaaagtttataaactcagcatccctggggtggggatgggggat 244
           |||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||
Sbjct: 385 aaagttgggtgcagcagcaaagtccataaactcagtatccctggggtggggatgggggat 444

                                                                       
Query: 245 gagcaggggagacaggagagtcacagaaacgtgggacagatgttctggtgtgcaagcatc 304
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 445 gagcaggggagacaggagagtcacagaaacgtgggacagatgttctagtgtgcaagcatc 504

                                                                       
Query: 305 ttacaagagatcttgtctgaatggaaaagtggaggaccagttctcaggattgcttctgat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttacaagagatcttgtctgaatggaaaagtggaggaccagttctcaggattgcttctgat 564

                            
Query: 365 catatgtgtatgtttgg 381
           |||||||||||||||||
Sbjct: 565 catatgtgtatgtttgg 581


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)