Query= MSMg01no373_l13.b1 MSMg01no373_l13.b1 CHROMAT_FILE:
MSMg01no373_l13.b1 PHD_FILE: MSMg01no373_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:44 2005
(285 letters)
>mm_chr17_65001259_65001944
Length = 686
Score = 482 bits (249), Expect = e-140
Identities = 277/287 (96%), Gaps = 3/287 (1%)
Strand = Plus / Minus
Query: 1 caaccaccaccactacagtggggtgggaaggggagaaagattgacgtgaatgtgccatgt 60
||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 486 caaccaccaccaccacagtggggtgggaagggaacaaagattgacgtgaatgtgccatgt 427
Query: 61 caggcatgtgtggaagttttctgggattaattctcagtagatttaaaattgtgttaaaat 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 caggcatgtgtggaagctttctgggattaattctcagtagatttaaaattgtgttaaaat 367
Query: 121 aaaaaggaaagaaataattgtaataat--gagactttgattcctaatggagacaaaataa 178
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 366 aaaaaggaaagaaataattgtaataatgagagactttgattcctaatggagacaaaat-a 308
Query: 179 aaattacccacaaataacttcaataaaaatcacagatgcttatcataaagaaaagcataa 238
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 307 aaattacccacaaataacttcaataaaaatcacagatgctgatcataaagaaaagcataa 248
Query: 239 aagttatactgaggtatgatacatttgcaaagggcttcctgtcgagt 285
||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 247 aagttatactgaggtatgaaatatttgcaaagggcttcctgtcgagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 686
Length adjustment: 9
Effective length of query: 276
Effective length of database: 677
Effective search space: 186852
Effective search space used: 186852
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no373_l13.g1 MSMg01no373_l13.g1 CHROMAT_FILE:
MSMg01no373_l13.g1 PHD_FILE: MSMg01no373_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:44 2005
(519 letters)
>mm_chr17_64828080_64828998
Length = 919
Score = 938 bits (485), Expect = 0.0
Identities = 507/519 (97%), Gaps = 9/519 (1%)
Strand = Plus / Plus
Query: 1 tgtgagagataaaatgagtcttgcaatgtgccaagaatagaagttttatgtagttataca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgagagataaaatgagtcttgcaatgtgccaagaatagaagttttatgtagttataca 260
Query: 61 agagccaatcgttaaaactcaccacgtaaaaacaaaacaaaaaaagaaaaagaagaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagccaatcgttaaaactcaccacgtaaaaacaaaacaaaaaaagaaaaagaagaaaaa 320
Query: 121 tcatccatttcagtaattgaaataaaattattcaatgaaatgtaaatatccattcacaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatccatttcagtaattgaaataaaattattcaatgaaatgtaaatatccattcacaac 380
Query: 181 aaagtgacccttaacaaaatagaaaggggaggcagcgtctttaactctgggtgtgtctgc 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 aaagtgacccttaacaaaatagaaaggggaggcaacgtctttaactctgggtgtgtctgc 440
Query: 241 taacagcagtcaactcctacactggatgctgtggaagactgaaatggagagagtgtgcat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taacagcagtcaactcctacactggatgctgtggaagactgaaatggagagagtgtgcat 500
Query: 301 ggggctgggaacaagtcaagcacatgagctgccaaggcctgtatccagcatctttatgga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggggctgggaacaagtcaagcacatgagctgccaaggcctgtatccagcatctttatgga 560
Query: 361 gaccctagtctgttcaagtcaacaaaaaccagtgaaaccagtgaaagcttaggggaggtt 420
||||||| ||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 561 gaccctattctgttcaagtcaacaaaaac---t------agtgaaagcttaggggaggtt 611
Query: 421 gccattatccatagccggcagtgtactggcagactcaaaaggttccgcagatgccctgtt 480
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 612 gccattatccatagccggcagtgtactggcaaactcaaaaggttccgcagatgccctgtt 671
Query: 481 agagttagcagtgaacacatctctcttgattctagaaca 519
|||||||||||||||||||||||||||||||||||||||
Sbjct: 672 agagttagcagtgaacacatctctcttgattctagaaca 710
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space: 462681
Effective search space used: 462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
