BAC Information

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BAC

Clone NameMSMg01-373P03
Chromosome17 (Build37)
Map Location 58,469,980 - 58,589,784
singlet/doubletdoublet
Overlap geneCntnap5c
Upstream geneEmr1, EG224916, LOC674419
Downstream geneLOC620408, EG545216, LOC668648, 2610034M16Rik, Nudt12, 4930505H01Rik, LOC100043537
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373P03.T7 (MSMg01no373_p03.b1)MSMg01-373P03.TJ (MSMg01no373_p03.g1)
ACCAG479856AG479857
length759772
length of high quality
(start - end)		541 (36 - 576)493 (74 - 566)
definitionCHROMAT_FILE: MSMg01no373_p03.b1 PHD_FILE: MSMg01no373_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:01 2005CHROMAT_FILE: MSMg01no373_p03.g1 PHD_FILE: MSMg01no373_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,469,980 - 58,470,517)(58,589,292 - 58,589,784)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGT
TATTTCTTCCATGAAGAAATGAATTAAGTATAAAAGTTCAGAAGAAGATA
TTAATTTGGAAAGATACTTGCTATAAGTATTCTGTCATCTTTGCTGCTAT
GCTGCTCAATGGGGCTTGTAATGTATAAACACTTGTTGTCCATGCTCCAG
GATCCAAAGACAGTCTCATACACTTGACAAACCTGAAGTTTTGATCTGTT
TGCATGTTTTGGGCCATAAACTTTTAAACCAGTGATAAGCAGATGATTGA
ATGGCCCATGGGCTTAAAAAATATCAGTACTCTGCTTCTATTTCCTGCTC
TTTGCCTTCCTCTTCCCCTTCTTCATTTTTCCTCTCCCCTTTCTCTTCTT
CCTCTTCCTTTCCTCAGACTCACTAGGTATTTGAGAGAAATTATTAAAAT
TAGTTATAAAATTCACACATTCTTAGAGGGCATTGTTCCCTGACTTCACA
TACATAAATGAACTCAAGTGTCTGCTGAAAGCTGCAGNTCATTGATATCT
GTGCTTCTTTGCTGGNGGAATCCTCAATAAAATAGAATTTGCAGAGAAGA
CCTCGCTTTTCACTTTTATTTAAATATTTGGAGTATGTAAAATTTTCAGA
AGCTATTTGCCGATAATGATTTCCACATCAATAAATAAGTTATAACCATT
GATCTACTGGATTTTTAAAAGTTTTTTTATATTAAACCATACTTTTTCCC
TTTTAATAA

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGGAAAATTAGCCAGTAAAGTACAATT
TGGTGCTGCAACAAGTTGGGCTATGTAAAGATCTCAGGAGTTTCAAATAA
CAAATGTATCGATAGACACTAAGAAAATTCTGAGGAAGAAATAAAGGTTT
GACTATGAGAAGCAAGTCACATGATTTCTGCACTCAAGGAACCAGTACTC
CCAGAAGGGTCCTGAACTTATTGGCATATGGCATTATCATCAGGAACTCC
AGAAACTGCTGTTTCAGTGATGCCCATGTGGAACCTGACTCTGCAATGGG
AAATGAGGAACCCTACTTCATTTGTATATGTAACTTCCAAATTAAGATTT
AAGACTAAATATCTACATCAGAGCCTCGGGTTTCTTAGAAAACAGGATAA
CTGTAATCACTAGACAGCACCTCACTTCTAGATGCCAAGTCTAGTTCTGT
CCTCAAGGGAAAGTCTGTAAGACATGAAAAGTAACAGGCAAGACATATAT
GAAAATCAAAATAGTGGACCCTGAGCACAATGGAAAAAGGAAGAAGCTGC
CATTTCAGCCCTCACTCCCTATCTACATCCCCTGAGTTTACCACTGTATT
TTTTTTATTTTTCTAAATTGTTAAAATCTTGTCTTCGAATTATTGTGCAG
GTGTTTGATACACCTTTTTTACAAGTGTTTTGACCCCATACTCGACTAAG
CCGTTCCTTGTATTTCTATCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_p03.b1 MSMg01no373_p03.b1 CHROMAT_FILE:
MSMg01no373_p03.b1 PHD_FILE: MSMg01no373_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:01 2005
         (541 letters)



>mm_chr17_58469777_58470717
          Length = 941

 Score = 1029 bits (532), Expect = 0.0
 Identities = 536/538 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttgttatttcttccatgaagaaatgaattaagtataaaagttcagaagaaga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttgttatttcttccatgaagaaatgaattaagtataaaagttcagaagaaga 263

                                                                       
Query: 64  tattaatttggaaagatacttgctataagtattctgtcatctttgctgctatgctgctca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tattaatttggaaagatacttgctataagtattctgtcatctttgctgctatgctgctca 323

                                                                       
Query: 124 atggggcttgtaatgtataaacacttgttgtccatgctccaggatccaaagacagtctca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atggggcttgtaatgtataaacacttgttgtccatgctccaggatccaaagacagtctca 383

                                                                       
Query: 184 tacacttgacaaacctgaagttttgatctgtttgcatgttttgggccataaacttttaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tacacttgacaaacctgaagttttgatctgtttgcatgttttgggccataaacttttaaa 443

                                                                       
Query: 244 ccagtgataagcagatgattgaatggcccatgggcttaaaaaatatcagtactctgcttc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccagtgataagcagatgattgaatggcccatgggcttaaaaaatatcagtactctgcttc 503

                                                                       
Query: 304 tatttcctgctctttgccttcctcttccccttcttcatttttcctctcccctttctcttc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tatttcctgctctttgccttcctcttccccttcttcatttttcctctcccctttctcttc 563

                                                                       
Query: 364 ttcctcttcctttcctcagactcactaggtatttgagagaaattattaaaattagttata 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttcctcttcctttcctcagactcactaggtatttgagagaaattattaaaattagttata 623

                                                                       
Query: 424 aaattcacacattcttagagggcattgttccctgacttcacatacataaatgaactcaag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaattcacacattcttagagggcattgttccctgacttcacatacataaatgaactcaag 683

                                                                     
Query: 484 tgtctgctgaaagctgcagntcattgatatctgtgcttctttgctggnggaatcctca 541
           ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 684 tgtctgctgaaagctgcagttcattgatatctgtgcttctttgctggtggaatcctca 741


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no373_p03.g1 MSMg01no373_p03.g1 CHROMAT_FILE:
MSMg01no373_p03.g1 PHD_FILE: MSMg01no373_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:01 2005
         (493 letters)



>mm_chr17_58589092_58589984
          Length = 893

 Score =  922 bits (477), Expect = 0.0
 Identities = 489/493 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggaaaattagccagtaaagtacaatttggtgctgcaacaagttgggctatgtaaagatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 aggaaaattagccagtaaagtacaatttggtgctgcaacaagttgggctatgtaaagatc 634

                                                                       
Query: 61  tcaggagtttcaaataacaaatgtatcgatagacactaagaaaattctgaggaagaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 tcaggagtttcaaataacaaatgtatcgatagacactaagaaaattctgaggaagaaata 574

                                                                       
Query: 121 aaggtttgactatgagaagcaagtcacatgatttctgcactcaaggaaccagtactccca 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 573 aaggtttgactatgagaagcaagtcacatgatttctgcactcaaggaagcagtactccca 514

                                                                       
Query: 181 gaagggtcctgaacttattggcatatggcattatcatcaggaactccagaaactgctgtt 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 513 gaagggtcctgaacttattggcatatggcatcatcatcaggaactccagaaactgctgtt 454

                                                                       
Query: 241 tcagtgatgcccatgtggaacctgactctgcaatgggaaatgaggaaccctacttcattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tcagtgatgcccatgtggaacctgactctgcaatgggaaatgaggaaccctacttcattt 394

                                                                       
Query: 301 gtatatgtaacttccaaattaagatttaagactaaatatctacatcagagcctcgggttt 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 393 gtatatgtaacttccaaattaagatttaagactaaatatctacatcagagcctctggttt 334

                                                                       
Query: 361 cttagaaaacaggataactgtaatcactagacagcacctcacttctagatgccaagtcta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 cttagaaaacaggataactgtaatcactagacagcacctcacttctagatgccaagtcta 274

                                                                       
Query: 421 gttctgtcctcaagggaaagtctgtaagacatgaaaagtaacaggcaagacatatatgaa 480
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 273 gttctgtcctcaagggaaagtctgtaagacatgaaaagtaacaggcaagatatatatgaa 214

                        
Query: 481 aatcaaaatagtg 493
           |||||||||||||
Sbjct: 213 aatcaaaatagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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