BAC Information

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BAC

Clone NameMSMg01-374L02
Chromosome17 (Build37)
Map Location 58,716,074 - 58,716,444
singlet/doubletsinglet
Overlap genenone
Upstream geneCntnap5c, LOC674419
Downstream geneLOC620408, EG545216, LOC668648, 2610034M16Rik, Nudt12, 4930505H01Rik, LOC100043537
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374L02.T7 (MSMg01no374_l02.b1)MSMg01-374L02.TJ (MSMg01no374_l02.g1)
ACCAG480427AG480428
length820789
length of high quality
(start - end)
312 (46 - 357)371 (74 - 444)
definitionCHROMAT_FILE: MSMg01no374_l02.b1 PHD_FILE: MSMg01no374_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:00 2005CHROMAT_FILE: MSMg01no374_l02.g1 PHD_FILE: MSMg01no374_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGGATCCGCGGA
ATTCCTGATCTTTCCACACTTTTACCATGAATGGGTTTTGGATCTTGTTG
AATGCTTTTTCAGTATCTAATGACATGTTCATGTGGTTTTTGTCTTTGCA
TTTGTTTATATAATGGATTATGTTGATGGATTTCCATATATTAAACCATC
GCTGCATCCCTGGAATAAAACCTACTTGGTCAAGATGGATGATTGCTTTA
ATGTTTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGGTTTTTGCATC
GATATTCATAAGGGAAATTGGTCTGAAATACTCTATCTTTGTTGGATCTT
TCTGTGGTTTAGGTATCACAGTAATTGTGGCTTCATAGAATGAGTCGGGT
AGAGTACCTTCTACTTCTATTTTGTGGAATAGTTTGTGCAGAATTGTAAT
TACATCTTCTTTGAATGACTGATAGAACTCTGCACTAAATCCATCTGGCC
CTGTTCTTTTTTTTGTCTGTCAGACCATTTAATGACTTGCTTTTATTTCC
TTATGTCTATATTCCACTGTTTTACATCTTTTTCTTTGACCTCGATATAA
CTTTTGTTTCCCGCCCCTCTGCTCTATATTACTTCCTCCATCTTTGTCTA
ATTTATTCCACTTTTTACTACTAAAATTTTCCTATTTTCTTAATATCTCT
TTATTGCTTTTTTCTTACTTTTTCTTCCTTATTTTATTTTTTTTCCTCCA
CCCTCTCCTTTTTTATTTTTTTTCACTCCTTCTCAACATTTTCTCTTTAC
TCCATCTTTTTCTTCATTTA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAATTTTGTAGACCAGGCTGGCCTCGAA
CTCAGAAATCCGCCTGCCTCTGCCTCACAAGTGCTGGGATTAAAGGCATG
CGCCATCACTGCCCGGCAAGAAGAATGATTGTTAAGTGTGTTAAATTCAG
AGTGTTCTGTGTATCCTCCTGTCTTAGCTTCTCTTATCTCTAACACAAAG
AACATAAGGAAGAAAAGGCTTGCAGAGTAGAGTATGTTTTTGTAAGGAAA
TCAATGTAGCAGGATTTGAAAGCAGCTGACCACATGCCATTCATCAACTG
GAAAGCAGAGAGGAATGAATACTTGCAAATTCTCAGCTTTCTTTCTCTAA
TTTGTAAAAATCAGCAACCCTGGCCCAAGGGATGGTCCTACTCATAGTAA
AGATGAGTCTCCTCCCATCACGAAAATCCACTCTGCCTTTCTTAGATGAC
ATAACATCACCTAATGATTTGTCGTGTAACATTAACCATCCCTTTGCCCG
TTACTGGAATAACTATGACCACCGTCTCCTTAGGACGAGCTCGATACCTC
AAAATTCCCTTTCTGATTTCCGTGCTGCTCATTACGAACTTGTAGTTTTC
TCCGAATTTTTTTCTTTCTTAGACCCCCCCCCCTTTTTGAAGTCCTTTTT
TTCTTATTTTCCCCTTTCGCCCTGACTGCCTATGTCTTACTTTCATATTT
TTCCTTTTTCTCTTTCCTTTCCTTCCGCTTTACCATTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_l02.g1 MSMg01no374_l02.g1 CHROMAT_FILE:
MSMg01no374_l02.g1 PHD_FILE: MSMg01no374_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:00 2005
         (371 letters)



>mm_chr17_58715874_58716644
          Length = 771

 Score =  702 bits (363), Expect = 0.0
 Identities = 369/371 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattttgtagaccaggctggcctcgaactcagaaatccgcctgcctctgcctcacaagtg 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 aattttgtagaccaggctggcctcaaactcagaaatccgcctgcctctgcctcacaagtg 260

                                                                       
Query: 61  ctgggattaaaggcatgcgccatcactgcccggcaagaagaatgattgttaagtgtgtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgggattaaaggcatgcgccatcactgcccggcaagaagaatgattgttaagtgtgtta 320

                                                                       
Query: 121 aattcagagtgttctgtgtatcctcctgtcttagcttctcttatctctaacacaaagaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattcagagtgttctgtgtatcctcctgtcttagcttctcttatctctaacacaaagaac 380

                                                                       
Query: 181 ataaggaagaaaaggcttgcagagtagagtatgtttttgtaaggaaatcaatgtagcagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataaggaagaaaaggcttgcagagtagagtatgtttttgtaaggaaatcaatgtagcagg 440

                                                                       
Query: 241 atttgaaagcagctgaccacatgccattcatcaactggaaagcagagaggaatgaatact 300
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 atttgaaagcagctgaccacatgccattcaccaactggaaagcagagaggaatgaatact 500

                                                                       
Query: 301 tgcaaattctcagctttctttctctaatttgtaaaaatcagcaaccctggcccaagggat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcaaattctcagctttctttctctaatttgtaaaaatcagcaaccctggcccaagggat 560

                      
Query: 361 ggtcctactca 371
           |||||||||||
Sbjct: 561 ggtcctactca 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)