BAC Information

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BAC

Clone NameMSMg01-376G07
Chromosome17 (Build37)
Map Location 39,984,942 - 39,985,283
singlet/doubletsinglet
Overlap geneLOC672857
Upstream geneLOC100043297, LOC100043300, EG668200, LOC627695
Downstream geneLOC634967, Pgk2, Crisp3, Crisp1, LOC668229, LOC100043756, EG433107, EG619517, Crisp2, Rhag
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376G07.T7 (MSMg01no376_g07.b1)MSMg01-376G07.TJ (MSMg01no376_g07.g1)
ACCAG481720AG481721
length772752
length of high quality
(start - end)		375 (45 - 419)416 (71 - 486)
definitionCHROMAT_FILE: MSMg01no376_g07.b1 PHD_FILE: MSMg01no376_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:17 2005CHROMAT_FILE: MSMg01no376_g07.g1 PHD_FILE: MSMg01no376_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:17 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATTAAGTCCCTGCCCT
TTGTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGGCCC
TCGGATCGGCCCCGCCGGGGTCGGCCCACGGCCCTGGCGGAGCGCTGAGA
AGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTAACAAGGTTT
CCGTAGGTGAACCTGCGGAAGGATCATTAACGGGAGACTGTGGAGGAGCG
GCGGCGTGGCCCGCTCTCCCCGTCTTGTGTGTGTCCTCGCCGGGAGGCGC
GTGCGTCCCGGGTCCCGTCGCCCGCGTGTGGAGCGAGGTGTCTGGAGTGA
GGTGAGAGAAGGGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNTNNNNNNNNNNNTNNNN
NNTNNTNNNNNNTNNNNNNNNN

TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGCTTCACAATGATAGGAAGAGCCGACATC
GAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAG
TTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGT
CAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTCGTACTGAAAAT
CAAGATCAAGCGAGCTTTTGCCCTTCTGCTCCACGGGAGGTTTCTGTCCT
CCCTGAGCTCGCCTTAGGACACCTGCGTTACCGTTTGACAGGTGTACCGC
CCCAGTCAAACTCCCCACCTGGCACTGTCCCCGGAGCGGGTCGCGCCCGC
CCGCACGCGCGGGACGGACGCTTGGCGCCAGAAGCGAGAGCCCCTCGGGG
CTCGCCCCCCCGCCTCACCGGGNCAGGGAAAAAACGAAGAGAGNAGNGGN
ATTTCACCGGCGGNCCTCGAGGCCGTTGTGCCCCGATCCCGATTCGAGGA
CCGGGTCGGACTTCATGTCACTCATCCTTAATTCTAAACTCTAATGTATC
TTCCACTATGATTAACAAAATCTAGTTCACTAACTCTAACCCTTCCCGCC
GATATCTTTCTGCTTTCATCCTATGTTCCTTGGTATTCTTCCAAATCTTT
CCCCTTCAATTTCAACCACAAATTATATCAAACCTCTACTCATACTACTA
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_g07.b1 MSMg01no376_g07.b1 CHROMAT_FILE:
MSMg01no376_g07.b1 PHD_FILE: MSMg01no376_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:17 2005
         (375 letters)



>mm_chr17_39984739_39985513
          Length = 775

 Score =  582 bits (301), Expect = e-170
 Identities = 339/369 (91%), Gaps = 27/369 (7%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcccagtaagtgcgggtcataagcttgcgttgattaagtccctgccctttgtaca 63
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcccagtaagtgcgggccataagcttgcgttgattaagtccctgccctttgtaca 263

                                                                       
Query: 64  caccgcccgtcgctactaccgattggatggtttagtgaggccctcggatcggccccgccg 123
           ||||||||||||||||||||||||||||||||||||||                      
Sbjct: 264 caccgcccgtcgctactaccgattggatggtttagtga---------------------- 301

                                                                       
Query: 124 gggtcggcccacggccctggcggagcgctgagaagacggtcgaacttgactatctagagg 183
                ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 302 -----ggcccacggccctggtggagcgctgagaagacggtcgaacttgactatctagagg 356

                                                                       
Query: 184 aagtaaaagtcgtaacaaggtttccgtaggtgaacctgcggaaggatcattaacgggaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 aagtaaaagtcgtaacaaggtttccgtaggtgaacctgcggaaggatcattaacgggaga 416

                                                                       
Query: 244 ctgtggaggagcggcggcgtggcccgctctccccgtcttgtgtgtgtcctcgccgggagg 303
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 417 ctgtggaggagcggcggcgtggctcgctctccccgtcttgtgtgtgtcctcgccgggagg 476

                                                                       
Query: 304 cgcgtgcgtcccgggtcccgtcgcccgcgtgtggagcgaggtgtctggagtgaggtgaga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 cgcgtgcgtcccgggtcccgtcgcccgcgtgtggagcgaggtgtctggagtgaggtgaga 536

                    
Query: 364 gaaggggtg 372
           |||||||||
Sbjct: 537 gaaggggtg 545


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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