BAC Information

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BAC

Clone NameMSMg01-376G08
Chromosome17 (Build37)
Map Location 87,077,510 - 87,077,963
singlet/doubletsinglet
Overlap genenone
Upstream geneSix2, LOC100043903, Srbd1, LOC545228, Prkce
Downstream geneEpas1, 1700090G07Rik, Atp6v1e2, Rhoq, Pigf, Cript, EG433144, Socs5, Mcfd2, Ttc7, 1700011E24Rik, Calm2, LOC100043727, Tacstd1, Msh2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376G08.T7 (MSMg01no376_g08.b1)MSMg01-376G08.TJ (MSMg01no376_g08.g1)
ACCAG481722AG481723
length791751
length of high quality
(start - end)		473 (43 - 515)405 (71 - 475)
definitionCHROMAT_FILE: MSMg01no376_g08.b1 PHD_FILE: MSMg01no376_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:17 2005CHROMAT_FILE: MSMg01no376_g08.g1 PHD_FILE: MSMg01no376_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACAGAGATTCACGTCCTTTTACCTCCCGAGTGCTGTGACTAAAGGTGT
GCACCACCACGTCTGGTAAAAGGTTGTTTTGTTTTGTTTTGTTTTGTTTT
GTTTTGTTTTGCACTTATTTTTATTTATGTGTGCTTGTGTATGGTTGTCT
GCAGAAGTCAGAAGAAGACATTGAAACCCCTGGAGTTGGAGGATTTGAGC
TGCCTGTTATGTATACCGAACTCAGGTCATCTGAAAGAGGAGCGAATGCT
CTTAACCACTGAACAATCTCTCCAGCCCCCTGTGCTACTTAGCAAGACAG
TGTTCTGTGATGTTTTGTTTGTGTAATCTGACATGAATTTGAGTGTCAGA
TTAAGTACATTTCTCTATGGCCTGACAAAATTAGATGAGAAATGTTATAG
TTCCCAGGCCTTTGGAGATCTTATCTGTTATGTTTTACTTCAAAGCAAAA
TTGCAGTAAAATATTTTGTACCTTCAACTAGATTCTTTTTTTTTTTTTTA
ATTTTTTGGGGTGGGTGGAAAAGGCCTATGTGGGGCGCATTGAATCCCCT
GCCCCTACCCCCAATACTTTTTTTACATTTTTACCCCACAATTTCTTATT
TGTTCCCTGTCCTCTCTCCCCTTCCCCCTAATTTTCCATTTCTCTTTTTA
GTCATTTTTCCTCACATCAAAATGCACTTTACTCTTCCTCTCCTCCCTTC
CTTTTTTCTTTCTCATCTTTCTCCTCTCGCCTTCTTCCACG

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTCCATAGGCCAGCCTGGCCTCAAGCTCA
GAGTAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCG
CCACCACGCCCGGCATAATGGACATTTTTTTATTGGAACATTCACTTTAA
GGGTTATTTTTTTTATTGTTGTTGTTTTGTTTTTATTTTTCTAGATAGGG
TTTCTCTGTGTAGCCCTGACTGTCCTGGAATTCACTCTGTAGACCAGGCT
GGCCTCGAACTCAGAAATCCGCTTGCCTCTGCCTCCCAAGTGCTGGGATA
AAAGGCGTGCGCCACCACCGCCTTGCTAAAGGTTATTTATTTGCTGGGTG
TTGGGATGTCAGGGACGTGCATGCTGTGGTACACTTGTGGAAGTCAGAGG
ACAACTTGCAGGACCTATTTTTCTCCCTTTACCACATGGGGCCCAAGGAC
CGGACTGGATCTCTATGATAGGACTCATATTGTCAGGCTTGCCACAATGT
GCCTTCATCTGCCGAGGCCTCCCCCAAGCCCTGTTTGCCCTTTTTCTTTA
CAAAATCTTTCTGTGTTAATGCTCCCTATAAGAAAGCGTCATCTCCCTTC
CCCCTGTTCTTGGTTCTTTTCCCTTTTCTTTCATGACATATCTGGACCAC
CTCATGCCCCCTCATTTCTCTCGCACCCCTCTCCATTCCACTTTTTTTTC
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_g08.b1 MSMg01no376_g08.b1 CHROMAT_FILE:
MSMg01no376_g08.b1 PHD_FILE: MSMg01no376_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:17 2005
         (473 letters)



>mm_chr17_87077291_87078163
          Length = 873

 Score =  822 bits (425), Expect = 0.0
 Identities = 451/469 (96%), Gaps = 15/469 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacagagattcacgtccttttacctcccgagtgctgtgactaaaggtgtgcacca 64
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 gaattcacagagatccaagtccttttacctcccgagtgctgtgactaaaggtgtgcacca 279

                                                                       
Query: 65  ccacgtctggtaaaaggttgttttgttttgttttgttttgttttgttttgttttgcactt 124
           ||||||||||||||||||||||||||||||||||||||||               |||||
Sbjct: 280 ccacgtctggtaaaaggttgttttgttttgttttgttttg---------------cactt 324

                                                                       
Query: 125 atttttatttatgtgtgcttgtgtatggttgtctgcagaagtcagaagaagacattgaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atttttatttatgtgtgcttgtgtatggttgtctgcagaagtcagaagaagacattgaaa 384

                                                                       
Query: 185 cccctggagttggaggatttgagctgcctgttatgtataccgaactcaggtcatctgaaa 244
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 385 cccctggagttggaggatttgagctgcctgttatgtattccgaactcaggtcatctgaaa 444

                                                                       
Query: 245 gaggagcgaatgctcttaaccactgaacaatctctccagccccctgtgctacttagcaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaggagcgaatgctcttaaccactgaacaatctctccagccccctgtgctacttagcaag 504

                                                                       
Query: 305 acagtgttctgtgatgttttgtttgtgtaatctgacatgaatttgagtgtcagattaagt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acagtgttctgtgatgttttgtttgtgtaatctgacatgaatttgagtgtcagattaagt 564

                                                                       
Query: 365 acatttctctatggcctgacaaaattagatgagaaatgttatagttcccaggcctttgga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acatttctctatggcctgacaaaattagatgagaaatgttatagttcccaggcctttgga 624

                                                            
Query: 425 gatcttatctgttatgttttacttcaaagcaaaattgcagtaaaatatt 473
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gatcttatctgttatgttttacttcaaagcaaaattgcagtaaaatatt 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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