BAC Information

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BAC

Clone NameMSMg01-377O06
Chromosome17 (Build37)
Map Location 60,147,136 - 60,147,450
singlet/doubletsinglet
Overlap genenone
Upstream geneNudt12, 4930505H01Rik, LOC100043537, LOC100043542
Downstream geneLOC100043549
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377O06.T7 (MSMg01no377_o06.b1)MSMg01-377O06.TJ (MSMg01no377_o06.g1)
ACCAG482866AG482867
length767799
length of high quality
(start - end)
446 (50 - 495)322 (80 - 401)
definitionCHROMAT_FILE: MSMg01no377_o06.b1 PHD_FILE: MSMg01no377_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:14 2005CHROMAT_FILE: MSMg01no377_o06.g1 PHD_FILE: MSMg01no377_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTTCAACCTGCTTTCATTATGAACATTTTTTTTTTACTCTC
ACTTGCAGCAGAACATTTATGTGTCTATAAGGCTTGTGTGGACGCCGTGC
CTCCCAGAATTTGAAAGGTAACAGTCTAAGACCTTTTGCTTTCCTAGTTT
GTGTTGAAATGACATCAGCCATTCTGATAGATCTGCTTTCGAAAATGTCT
TTTGCACTGCTCTTTTGTAACTTTTGATGTACTTTCTTGGAGCTACATGT
ATTGTTTCAGTACAGCATGATAGAAGTTTCTATTCTAGACCCATGTGTCA
GATAGTCTGTGCACCTCCTGTACCTGTATGGGGTTCTTTCTCCCTTGATT
ATAGAAAGGTTTTATGACTTTCTTAAAGTTATCTGTATGAGGATGGGGAG
ATAACGCTGCTGTTGGGTGTACTTCTCACTCTTGTACAGGACCTGCTTTC
AAGTCCTGACTCCCATATGTCACGCGATGAATGTTTACAGCTGCCTTTCT
TATGATACACTTTGTTATCTTTCTCCTCCTCCTCCCCTCTGCAAGTTCCC
CCTTTTCTATATGTTGTTTTAAGGCCTCCTGTTTCCCCCCTCTTTCTTCT
TTTTCCATTCCTTTCCCCTCCTTTCTTTTTTCTCGCCTTTCTTTTTTCTT
CCCTTTTTTCCCCCCTCTCTTACCACTCTCTTTCTTACCCTTCCTTTTTT
CCCTCTTCCCCCCACCN
TTCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGGACTTTCCATCAGGAGAC
AGCAATTTTAGACTTTCTGGGGCCACAGTCTGAAATCCACTTTAATAAGT
CATAGATAGATAGATAGATAGATAGACAGATATACATAGAATATTAAATA
TATTGAAAAATTAATATCATATATACTATATAAAATATGTTGTATATATG
GACATACAAATATATGTAAACATGTATGTTATATGTGGAAATTTTATTTT
ATTATTTCAGTTTCTGTAGGAAACTCCATCTAATGCAATGACTATTAATC
CTTATTAAGAGAGGAGATGATGATTCAGAGCTTTTCTTTTTTCGTTTTGT
TTTGTTTTGCTTTGTTTTGCCCCGCTTCTGCTTGTTTTTCTTTTCTTTTC
TCTTCCCCTCCCCGCCTTCTTTTTCTTTTTTTTCCCCCCCTCTTTATATC
TCCCCCCCCCCCCTCTCCTTTTATTTTTCTTTTCTCCCCTCATTCTTTTT
TTCCCCCCCCCCTCCTTTTTTTCTTCAAAATTTATCCACCTCCTTTTCTC
CCCCATTTTTCAATTTACCCCTTTTATCCCGCTTTTCTGCCCTTTCTTTT
TCCCCCCCCCCTTCCCTTTTTCGCCACTCTCCTATATTTTATTTCTCCTC
TTTATTTTATCCCTTCCTTCTTCCCCATTTTTTTCGCTTCCTTTTTACCC
CCCTCTTTTTGTTCTTCCCTTTTTATTTTTTTTTTCTTCCCCCTATTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_o06.g1 MSMg01no377_o06.g1 CHROMAT_FILE:
MSMg01no377_o06.g1 PHD_FILE: MSMg01no377_o06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:14 2005
         (322 letters)



>mm_chr17_60146729_60147450
          Length = 722

 Score =  501 bits (259), Expect = e-146
 Identities = 290/315 (92%), Gaps = 24/315 (7%)
 Strand = Plus / Minus

                                                                       
Query: 32  gactttctggggccacagtctgaaatccactttaataagtcatagatagatagatagata 91
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 gactttctggggccacagtctgaaatccactttaataagtcatagatagatagatagata 663

                                                                       
Query: 92  gataga---------------------c---agatatacatagaatattaaatatattga 127
           ||||||                     |   |||||||||||||||||||||||||||||
Sbjct: 662 gatagatagatagatagatagatagatcgatagatatacatagaatattaaatatattga 603

                                                                       
Query: 128 aaaattaatatcatatatactatataaaatatgttgtatatatggacatacaaatatatg 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 aaaattaatatcatatatactatataaaatatgttgtatatatggacatacaaatatatg 543

                                                                       
Query: 188 taaacatgtatgttatatgtggaaattttattttattatttcagtttctgtaggaaactc 247
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 taaacatgtatattatatgtggaaattttattttattatttcagtttctgtaggaaactc 483

                                                                       
Query: 248 catctaatgcaatgactattaatccttattaagagaggagatgatgattcagagcttttc 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 catctaatgcaatgactattaatccttattaagagaggagatgatgattcagagcttttc 423

                          
Query: 308 ttttttcgttttgtt 322
           |||||||||||||||
Sbjct: 422 ttttttcgttttgtt 408


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)