Query= MSMg01no380_c13.b1 MSMg01no380_c13.b1 CHROMAT_FILE:
MSMg01no380_c13.b1 PHD_FILE: MSMg01no380_c13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:08 2005
(629 letters)
>mm_chr17_78842114_78843134
Length = 1021
Score = 1079 bits (558), Expect = 0.0
Identities = 608/628 (96%), Gaps = 8/628 (1%)
Strand = Plus / Plus
Query: 2 attttgaagtattaaaagttaaatgtgttaaagacagcaatgtcttatggattacataaa 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 attttgaagtattaaaagttaaatgtgttaaagacagcaatgtcttatggattacataaa 261
Query: 62 tatattcagtgagctaacccagaccccaaaagacaaacagctcatgttctctcttgtttc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tatattcagtgagctaacccagaccccaaaagacaaacagctcatgttctctcttgtttc 321
Query: 122 tggatgccagctcaggatgcagatgtatgcaagcttggataaccacaggaaagtgaggct 181
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aggatgccagctcaggatgcaaatgtatgcaagcttggataaccacaggaaagtgaggct 381
Query: 182 gatcaatggatgggcagaggcatgaatagatggatacatacatgtcgacagatttggtta 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gatcaatggatgggcagaggcatgaatagatggatacatacatgtcgacagatttggtta 441
Query: 242 cgtgttattgtatgacattgcactgttgagtacatagatgttccctgaggagaagtttct 301
| ||||| | | |||||||||||||| ||||||||||||| ||||||| ||||||||
Sbjct: 442 catgttaagg-acgacattgcactgttcagtacatagatgtcccctgag---aagtttct 497
Query: 302 cagcttagttaaagccttagaaatttccatttcaattttaaaatgttaaaggaagaaacg 361
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 caacttagttaaagccttagaaatttccatttcaattttaaaatgttaaaggaagaaacg 557
Query: 362 aggggagagaaaggaatctataaaataagaacataaactgcagcatgagtcgcaagagag 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aggggagagaaaggaatctataaaataagaacataaactgcagcatgagtcgcaagag-- 615
Query: 422 agggagtctgaggtgattgccgatgctgacaaactgaattattacgggaacactgtgaag 481
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 --ggagtctgaggtgattaccgatgctgacaaactgaattattacgggaacactgtgaag 673
Query: 482 gataagcattgagaaaaattgggaagcggagatgagagaagaaagaaaatgggagccaat 541
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 674 gataagcattgagaaaaattgggaagcagagatgagagaagaaagaaaatgggagccaat 733
Query: 542 tttattttgtgctgaagacaaaaagcctagacattttctagcagagaggggattgctcgt 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tttattttgtgctgaagacaaaaagcctagacattttctagcagagaggggattgctcgt 793
Query: 602 atttgtatgcataaaatgaaaatgaggt 629
||||||||| ||||||||||||||||||
Sbjct: 794 atttgtatgtataaaatgaaaatgaggt 821
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1021
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1011
Effective search space: 625809
Effective search space used: 625809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no380_c13.g1 MSMg01no380_c13.g1 CHROMAT_FILE:
MSMg01no380_c13.g1 PHD_FILE: MSMg01no380_c13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:08 2005
(570 letters)
>mm_chr17_79033457_79034426
Length = 970
Score = 1094 bits (566), Expect = 0.0
Identities = 569/570 (99%)
Strand = Plus / Minus
Query: 1 caaataagatattcccagcaaatggtagagacaagttcatgtgtgcagccttgacacagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 caaataagatattcccagcaaatggtagagacaagttcatgtgtgcagccttgacacagt 711
Query: 61 gcgtagtttatgagagtcactattgggcataactgcagttttatttcttgtgagactgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 gcgtagtttatgagagtcactattgggcataactgcagttttatttcttgtgagactgtt 651
Query: 121 tgtaatggctagtcatgcattcaaggcataaataaccccatgatagtaattaaagatttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 tgtaatggctagtcatgcattcaaggcataaataaccccatgatagtaattaaagatttt 591
Query: 181 ttaaattcatttgtctgtgcttaccactggacttcaaatccccaaagacactgcctgaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 ttaaattcatttgtctgtgcttaccactggacttcaaatccccaaagacactgcctgaat 531
Query: 241 aaatgtctttttccaaagcaatttaactcatcttttcaagaatatttcctacttatccat 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 aaatgcctttttccaaagcaatttaactcatcttttcaagaatatttcctacttatccat 471
Query: 301 gtagtctagtgggagactttcttgagactttgactggaaaataacattatttcaaaacgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gtagtctagtgggagactttcttgagactttgactggaaaataacattatttcaaaacgc 411
Query: 361 cttttaagctgaaaaaaattccttggacacaggaagatggtcttttctgtaaactcacac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 cttttaagctgaaaaaaattccttggacacaggaagatggtcttttctgtaaactcacac 351
Query: 421 tggtccctgagatagcaactggggaagaagggcttgccctgttcaaaaagggttatttaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tggtccctgagatagcaactggggaagaagggcttgccctgttcaaaaagggttatttaa 291
Query: 481 ggagccaagaggaacaagaaatatctgaactttttcattatagcccaatttttttcccag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ggagccaagaggaacaagaaatatctgaactttttcattatagcccaatttttttcccag 231
Query: 541 atccttgctgcaaagctttcaatcttagca 570
||||||||||||||||||||||||||||||
Sbjct: 230 atccttgctgcaaagctttcaatcttagca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
