BAC Information

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BAC

Clone NameMSMg01-380F12
Chromosome17 (Build37)
Map Location 88,660,346 - 88,660,448
singlet/doubletsinglet
Overlap genenone
Upstream geneMcfd2, Ttc7, 1700011E24Rik, Calm2, LOC100043727, Tacstd1, Msh2, Kcnk12, LOC626888, LOC668863, EG626920, Msh6, Fbxo11, EG225058
Downstream geneFoxn2, Ccdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867, Fshr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380F12.T7 (MSMg01no380_f12.b1)MSMg01-380F12.TJ (MSMg01no380_f12.g1)
ACCAG484742AG484743
length789695
length of high quality
(start - end)
---103 (61 - 163)
definitionCHROMAT_FILE: MSMg01no380_f12.b1 PHD_FILE: MSMg01no380_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:23 2005CHROMAT_FILE: MSMg01no380_f12.g1 PHD_FILE: MSMg01no380_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTAATTTTNNTTTTTCCTCATTTCNNNNNNNNNNNNNNNNNNTTTCCC
AAACNNNCNNNNNNNNNNNNNNNNTTTTCCCCCNCCCCNNCCNNNNNNNN
NNNNCNNNNNCCCNNNNNNNNCNCNNNNNCCCCCCNNNNCCNNCCCNCNN
NNNCCCCCCCCCCNNNNNNNNNNCCCCCCCCCCCCNCCTCCCCCCCCTCC
CCCCCCTCCCNCNCCCCCCCNNCCCCCCCTTTCCCCNNCCCCCNCCCCCT
CCCNTTCCCAAAATATAAAAAAAAAACGGGAGGGAGGGTGGGGCNNTTTT
TTTTTTTTTTTTTTTTCTTCCTTNNNNCCCCCCCNNCCCCCCNCCCCCTT
TCCCCCCCCTCCCCCCCCCCNNNNCCCNNCCCCTTTCCCCCCTTTTCCCC
CCCCCCCCTTTTTTTTTTCCTTCTCCCCCCCCCCCTCCCCCCCCCCCNTT
CTTTCCNNCCCCNCNCCCCCCCCCCCTCCCCCCCCCTCCCTCTTTCCCCC
CTCCCCNNCCCCCCCCCCCTCCCCCCCCCCCCCCCTTTTCCCCCCCCTCT
CCTCCTCNNNCCCCTNCCCCCCCCCCCTTCCTTCTCTCCCCCCCCCCCCT
TTTTCCCCCCCNCTCCCCCTCTCCNTTTCCCTCCCCCCNNAACATTCCCC
CTCCNCTNNTCNCCCNCCTCCCCCCTCCTCCCCCCTNCCCCCTTCCCCCT
TCCTCCCCCTTNCCCCCNTTNCCCCCTCCCCNNGGGCCCCCATCTTTTCC
TTTTCCCCNTCTCCCCTTCTTTTCCTCTTTTTCTTATTT
GGTAGCCTGGCGGCGCCTGTTTCAGAXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTGTAGGAGTCACAGTAAGGGATGTATCAGGCAAAGGAAGC
GGTTTGTTGACACTATTCATATGTAAAAGCCAGGCGGTGTCTGAAGAATC
CCGATGAATCTACTGCGGCCAGAGTCCTATAGACGTGAGCAGGAACAGAA
CCTAAAAAAATTTTTCCAATTTCCGTATATTTTTTAAAGTGTTGTTTTTT
CCTTGTCTTCCCTTTTTTTTTTTGCTTTTTCGTCTCCTTTTTTCTTTTTT
TCTTTTTCTTTCTCTCCCCTTCTTTCTTTTCTTTCTTTTTTCTTTTTTAT
TTTTTTCTCCCTCCTTTCCCTCCGCTTTTTTTTTTTTCCCTCCCCTCTCT
TATTTTTTCTTCCTCCCTTTTTTCTTTTTCTTCTCTCCCTTTTTTTTTTT
CCCTTTCTCTTCTTTTCTTTTTTTTTTTCTCGATTTTTCCCCCCCCCTCC
CTTTCTCTCTTTCTTTCTCCTCTTTTCTCCCCCCTTTTTTTCTCCCTCTT
TCCCCCCCCTCTCTTTTTTTTTCTTTTTTTTTTCTTTTCTTTTCTTCTCT
TCTTCCTTCCTTCCTATTTTCCCCTCCTCTCCCTTTTCTCTTCCTTGCCG
CCTCCTCCTTTTTCTTTTCCTTTCCTCCTCTCTTTACCCCTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_f12.g1 MSMg01no380_f12.g1 CHROMAT_FILE:
MSMg01no380_f12.g1 PHD_FILE: MSMg01no380_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:23 2005
         (103 letters)



>mm_chr17_88660146_88660648
          Length = 503

 Score =  199 bits (103), Expect = 3e-56
 Identities = 103/103 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtaggagtcacagtaagggatgtatcaggcaaaggaagcggtttgttgacactattcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtaggagtcacagtaagggatgtatcaggcaaaggaagcggtttgttgacactattcat 260

                                                      
Query: 61  atgtaaaagccaggcggtgtctgaagaatcccgatgaatctac 103
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtaaaagccaggcggtgtctgaagaatcccgatgaatctac 303


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 103
Length of database: 503
Length adjustment: 8
Effective length of query: 95
Effective length of database: 495
Effective search space:    47025
Effective search space used:    47025
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)