BAC Information

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BAC

Clone NameMSMg01-382H18
Chromosome17 (Build37)
Map Location 81,713,618 - 81,714,021
singlet/doubletsinglet
Overlap geneLOC100043704
Upstream geneSos1, Cdkl4, F420015M19Rik, Map4k3, LOC100043697, C230072F16Rik, LOC675572, EG668830, Tmem178, Thumpd2, LOC100043700
Downstream geneSlc8a1, EG668832, LOC100043707, LOC625467
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382H18.T7 (MSMg01no382_h18.b1)MSMg01-382H18.TJ (MSMg01no382_h18.g1)
ACCAG486377AG486378
length783748
length of high quality
(start - end)		---459 (63 - 521)
definitionCHROMAT_FILE: MSMg01no382_h18.b1 PHD_FILE: MSMg01no382_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:14 2005CHROMAT_FILE: MSMg01no382_h18.g1 PHD_FILE: MSMg01no382_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTGTCCCGTCTTCTCACCCCTCCTATCCTATCAATCCTCTCATTCCCTC
ACTATTACCCATCTCACCTCATTTTATCTATTACCCTTCTGTTTCTCTCT
CTCTCCTCGACTATAAGACCCGGCCCCCCTTAAAAAAAAAATATTTGGGG
CCGGGGGGCACCCCGCGTCCCCCCTTTTTAAATAAATTTTTTACACCCCC
GGGCGGAACAAATACAACCTTTTTTCTCCCCCCAAACAACCCCCCTCTGT
AAGAAAAAAACGANAAAAAAATGGTTTTTTTTTTGTTTTTTCCCCCCCCC
CCCCCCCGGCAGGGGCAAAAAAAGAAGAAGGGGGGTGGGCGTTTCACAAA
ACAATATTATTTCCCCCCCCCCCCCGGCGGGGGTGCACCCCCGCGGGGGG
GGGTGGGTTCTCACTTCTACAAAAAAAAAAAAAAACGAAAACGTTTTTCT
TTTTTTTTCATCCCCCCCCCCCCTCCCCACACCCTCTTTACTTTTTTATC
TCTTATTTTGGGGGGAGACGCGCGACCTCTCCTCTCTCTTGTTCGCGTTC
CTATCCCCCCCCTCACACTATTTTTGTTCGTTATGTGTGGGCCCCACCCC
CCTACCCCCCCCCCCCCTCCCGGCCCTTCCTTAAAANATAGCCGTTGGNC
ACCCGAAAAANNNACCTNTCTTCGAGGAGTAACACCATCCTACAGGNNNN
TACGCTCTACCGGNTTGCTCCGTCNAAGNCCGACCCGGGCNCAGGGTTCT
TCTTTTTCCNGGTTTTTCATCTTTCTTNCTTCG

AGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXAACCTGGACCACTCAGTGGTTATTATGGTTAGTCAGCA
TTTGGTGCACATTGGAATGATGAGAAACCCCTCTAAATCTGTGAGTTGCA
ACTCCCTTTGATAAATTTTTATCCTCAAAAATATTTAAATTATGATTCAG
AACAGCAGTGAAATTACAGTTCTGAAGTTGCAACATAGTAATTTAGTGGT
TGGGGGTCATCACAGCATGAGGAGCTATATTAAAGGATCGCAGCATTAAG
AAGGTCGGGAAGCACTGCTCTGCACGGCTGCCTTGTGAGCCTGCTGAAAT
AAAAATAAATCTACGTGCAGAGCCATTAGCCTCTCTTCTTCTATGCAACA
GCAATGAGTGTTTCCCCCTAGGGTCGTGTTGACGATTTAACTGTTCAGAC
TGAGAAGGTGTCCTAGTCACTGTTCAAAGCTATGAGTCCATGGGAGACGC
CATGATCACCATTTGATGGCTGCTACTCGTCTTTTCAACTACAGCTTTCT
GAATCCTGAAGAAACCCTCGAATATGAAAAAGTGTGCTCAGCTATTCCAT
GACATGTGCCAAAAACTTCCTTGTTGGGAGGGGGCCCTGGGGTTAAAAAG
GCCCCATTTATTCTTCTTAGCAAAACTGAACAGAAATTATGGGTTCCCCA
CCTTCTTGGTGTGAAAAATCGGGGAAAAGAAATTATTGCCCCCTCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_h18.g1 MSMg01no382_h18.g1 CHROMAT_FILE:
MSMg01no382_h18.g1 PHD_FILE: MSMg01no382_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:14 2005
         (459 letters)



>mm_chr17_81713163_81714021
          Length = 859

 Score =  729 bits (377), Expect = 0.0
 Identities = 398/405 (98%), Gaps = 1/405 (0%)
 Strand = Plus / Minus

                                                                       
Query: 55  atgatgagaaacccctctaaatctgtgagttgcaactccctttgataaatttttatcctc 114
           ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 859 atgatgagaaacccctctaaacctgtgagttgcaact-cctttgataaatttttatcctc 801

                                                                       
Query: 115 aaaaatatttaaattatgattcagaacagcagtgaaattacagttctgaagttgcaacat 174
           |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 800 aaaattatttaaattatgattcagaacagcagtgaaatcacagttctgaagttgcaacat 741

                                                                       
Query: 175 agtaatttagtggttgggggtcatcacagcatgaggagctatattaaaggatcgcagcat 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 agtaatttagtggttgggggtcatcacagcatgaggagctatattaaaggatcgcagcat 681

                                                                       
Query: 235 taagaaggtcgggaagcactgctctgcacggctgccttgtgagcctgctgaaataaaaat 294
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 680 taagaaggtcgggaagcactgctctgcatggctgccttgtgagcctgctgaaataaaaat 621

                                                                       
Query: 295 aaatctacgtgcagagccattagcctctcttcttctatgcaacagcaatgagtgtttccc 354
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aaatctacgtgcagaaccattagcctctcttcttctatgcaacagcaatgagtgtttccc 561

                                                                       
Query: 355 cctagggtcgtgttgacgatttaactgttcagactgagaaggtgtcctagtcactgttca 414
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 560 cctagggtcgtgttgacgatttaactgttcagactgagagggtgtcctagtcactgttca 501

                                                        
Query: 415 aagctatgagtccatgggagacgccatgatcaccatttgatggct 459
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aagctatgagtccatgggagacgccatgatcaccatttgatggct 456


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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