BAC Information

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BAC

Clone NameMSMg01-382M06
Chromosome17 (Build37)
Map Location 38,112,103 - 38,112,495
singlet/doubletsinglet
Overlap genenone
Upstream gene2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2, Olfr110, Olfr111, Olfr112, Olfr113, Olfr114, Olfr115, Olfr116, Olfr117, Olfr118, Olfr119, Scocp, Olfr120, Olfr1558-ps1, Olfr121, Olfr122, Olfr123, Olfr124, Olfr125, LOC672822, Olfr126, Olfr127, Olfr128, Ppia-ps17_697.1, Olfr761, Olfr1552-ps1
Downstream geneLOC100043265, Olfr129, Olfr130, Olfr131, Olfr132, Olfr133, Olfr134, Olfr135, Olfr138, Olfr137, Olfr762-ps1, Olfr136, LOC626985
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382M06.T7 (MSMg01no382_m06.b1)MSMg01-382M06.TJ (MSMg01no382_m06.g1)
ACCAG486593AG486594
length743766
length of high quality
(start - end)		697 (31 - 727)577 (76 - 652)
definitionCHROMAT_FILE: MSMg01no382_m06.b1 PHD_FILE: MSMg01no382_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:36 2005CHROMAT_FILE: MSMg01no382_m06.g1 PHD_FILE: MSMg01no382_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:36 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCATTGATCT
CACTTGATCTCGACATCTGAGGATGAACTCAACAGTTGATGAGGCAATAG
AAAATTTAGTCAGATTTTGGCACTTTCAATATAGTATCAAATAACAAGGG
GAGGAATTTTTACTGACTTCAAATTTTTCACTTCATTTTGTGTTATTTAG
TAATTTTAGTATCTCAGTGGAATAACATTTGTATTAGATAATACTTTTTA
AAGTATTTAGAGACCTTCTCATGCTACAAGTTTTTTATTTGACTCTGAAT
TTTGGCAGGTATGAAATATACTTATGTCAGGCTGTTTTTTCTATTTGTCC
TGTAAATATTGAAACCATAAAAGGAACAAATATGGACAAACTGTTAGGTT
GCCAATATTTACTGTCATCCATTCCTCACAAGGACTGCCTTCATTTCCTC
AGTCTCATCGACCTGCATCACTAACACGATGTTTGCATTGGGATGCTACA
GTTTAAGTGGGGCATGTTTTTTAAGTCACCAGTTAAGCCCTTGTCCAACA
TTCCTTATTGCGGCTACATTTGTCCCTTGGCCTCTATGTCTAAAACTATG
TCACTAAGGAAATTGTGTAGCTTCTTCCAGATGTGAGAATATACAACAGG
TATGCGTATTCCTGTAGATTTAAGGGATCAATGATATAAACTCCCAAAAG
TATTACTGAGAGAGTCAGGAACCAATAAGAATACTGAGTTAAN

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTAGCAATACCTGCCAGTTTGCTG
GAGAATATGCCAAGCAGTCCTCCAAGGATCAATTGGGACCTATTCCAGGC
CTGCCTTCCTCCTTCAACTACCTTGGAGCCACAGGCTATGTTTATATATT
TTGGTCTGGATTCACAGACAGGAGTATAGTAGAACTGTCCTCTAATAGGC
TCCACCCAGCAACTGATAGAAAAACATGCAGAGACCCTCAGCTAAACATT
AGACCAAGCTCAGGAAGTCTTATGGAACAGTGGTATGCATTGACGAACCA
TTGTACTACAATTGGCACATTATACATTAGGCATATAACCAAACTATCTG
AGACAAGTTACCAGGTGGAGAGACAAAGGCCTCTCCAAAAATGCATTTTT
GAAGCTTCCACTGCTTAATACTTAATTTAAGTGTAAGAAAATAAATTCCT
TATAGAGAAGTTTTGAAATAAAAAAAAAATGTTGTCTACATTTGAAATGG
AAGAAGCAAAATGACTCAATGCATCTGGTTTCAACAAGAACTCTCTTTGC
TTAGCAGCATATAAGTGGCTGTTTTTTCAACTATTACAGGTTTTCATGTT
ATCTTTGGAAGAAATCTGAATAAGACAGACTCAGAGAAAGAAGAGACTTA
TAAATCACATACCAAATTAAGGAGCAAAAAAGAGACATTGAAAGGAATTT
TTATTGCAAAATAAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_m06.g1 MSMg01no382_m06.g1 CHROMAT_FILE:
MSMg01no382_m06.g1 PHD_FILE: MSMg01no382_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:36 2005
         (577 letters)



>mm_chr17_38111903_38112879
          Length = 977

 Score =  414 bits (214), Expect = e-119
 Identities = 345/394 (87%), Gaps = 14/394 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtagcaatacctgccagtttgctggagaatatgccaagcagtcctccaaggatcaattg 60
           |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 agtagcaacacctgccagtttgctggggaatatgccaagcagtcctccaaggatcaattg 260

                                                                       
Query: 61  ggaccta-ttccaggcctgccttcctccttcaactaccttggagccacaggctatgttta 119
           ||||| | |||||||||||||||||| |||||||||| |||||||  |||||||||||| 
Sbjct: 261 ggacc-acttccaggcctgccttcctacttcaactactttggagcttcaggctatgtttg 319

                                                                       
Query: 120 tatattttggtctggattcacagacaggagtatagtagaactgtcctctaataggctcca 179
           ||| ||||| ||||||||||||||||||||||||  | |||||||||||||  |||||||
Sbjct: 320 tatgttttgatctggattcacagacaggagtataccataactgtcctctaaggggctcca 379

                                                                       
Query: 180 cccagcaactgatagaaaaacatgcagagaccctcagctaaacattagaccaagctcagg 239
           |  ||||  ||||||||| | |||||||||||| |||| |||||||||||||||||||||
Sbjct: 380 ctgagcagttgatagaaacagatgcagagacccacagccaaacattagaccaagctcagg 439

                                                                       
Query: 240 aagtcttatggaacagt--ggtatgcattgacgaaccattgtactacaattggcacatta 297
           ||||||| ||||| |||  |||||| ||||| |||||||||||||||| ||||||||| |
Sbjct: 440 aagtcttgtggaagagttgggtatggattgaggaaccattgtactacatttggcacatca 499

                                                                       
Query: 298 tacatt----a-----ggcatataaccaaactatctgagacaagttaccaggtggagaga 348
           ||||||    |     || ||||||| |||||||||||||||||||||||||| ||||| 
Sbjct: 500 tacattgggtatattgggtatataactaaactatctgagacaagttaccaggtagagagg 559

                                             
Query: 349 caaaggcctctccaaaaa-tgcatttttgaagct 381
           ||||  |||||||||||| ||||||||| |||||
Sbjct: 560 caaaatcctctccaaaaaatgcatttttcaagct 593


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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