BAC Information

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BAC

Clone NameMSMg01-383N20
Chromosome17 (Build37)
Map Location 37,021,383 - 37,021,917
singlet/doubletsinglet
Overlap geneTrim40
Upstream geneDhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164
Downstream geneTrim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2, Olfr110, Olfr111, Olfr112, Olfr113, Olfr114, Olfr115, Olfr116, Olfr117, Olfr118, Olfr119, Scocp, Olfr120, Olfr1558-ps1, Olfr121, Olfr122, Olfr123, Olfr124, Olfr125, LOC672822, Olfr126
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383N20.T7 (MSMg01no383_n20.b1)MSMg01-383N20.TJ (MSMg01no383_n20.g1)
ACCAG487435AG487436
length727668
length of high quality
(start - end)
545 (67 - 611)30 (68 - 97)
definitionCHROMAT_FILE: MSMg01no383_n20.b1 PHD_FILE: MSMg01no383_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:01 2005CHROMAT_FILE: MSMg01no383_n20.g1 PHD_FILE: MSMg01no383_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATATAGTCTACATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAATACCTTCCTCTTTTCTGACTTCCAAGGACACATACACATCAT
ACACATGTACACACGAACAATATTTTTGAGAGAAAGCAAATATAAATAAT
GTCAATAATTCTAAATGCATGAAACAAGATGGGGGCATCATTTACCATGT
TTAAGATAAGTAAGAGAGTTTCAGTTTTAGAAACATATTTAAAGATGTTT
TAATTTTTAATTATGTGCATGAGTATGTGTCTGCATATGAATATGTGCAT
GTGTATGGGTGCCCAAGGAGCCTAGACAAGCACTAGCAGCAGATCTCAGG
AAGATAGAATTACATACAGGTGATTCTGAGCCACCTGGTGTGGGTGCTGG
GAACCAAACTTAGGTCTTCTGAGAGAGCAATACTCCCTCTTAACTACTTA
GCCTCTAACGCCTGCAAATGCACCTCCTCTCTCTCTGTCTCTCTCTCTCT
CTCTGTCTCTCTCTGTCTCTGTGTCTCTCTCTCTGTTTCTGTCTGTCTCT
GTCTCTCTTTCTCTCTCTGTGTCTCTCTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTNTNNNTTNNNTNTTNTTNNNTTTTTTNTTTTTTGTT
TTTTTTTTGTTGTTTTTTTTGTTTTTTTTTGTTTGTTTTTTTTTTTTTTT
TTGTGTTGTGTTTTTTTTTTTTTTTTG
ATACAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACTATGAACAAAGGTTGGCTTTGAACTTACGAGC
TCCCACACTCTCCCTTCCCCAGTGTGGAATTAAAGACATGTGGCACCATA
TCCAGAAAATACATTTAAAAAAGTCTCTGCATACTTAAATGGAAAATTAT
TTTCAGAAATGATCCAAGCCATGATCCACAGGAAATCTTCTTTAAAAAAA
AGAAACCCCAANAAAATTTTTAAAACCGGTCCCAAAGTTTGGGGCCCAAA
AACCAAAAACNAAAAGGGGGCGGGGATTCTCTCAACACACGANTCAAAGG
GAAGGGGGGGGGGGGGGGAGGGGGCGGGAGGGGGGGGGGGGGGGAGAGGG
GGAGGAGAGAAGAAAAGAAGGAGGGGAGGAGAGAGGAGGAAGGAAGGAGG
AAGGGGGAGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGAGGAGA
GGGGGGGGGGAGGGGGGGGGGTNNCTTANNAAAAAAANCNNTNNNAAAAA
AAAACTGGGGGGGGGGGGGGGGGGGGGGGGGGGGTANCAAAAAAAAAANN
NNNGCNGNGNNGCNNCNNNNCCNCCAAGAGGGAGAGGCTCCCTTTTNNNN
NNNCCCAACCAGGTAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_n20.b1 MSMg01no383_n20.b1 CHROMAT_FILE:
MSMg01no383_n20.b1 PHD_FILE: MSMg01no383_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:01 2005
         (545 letters)



>mm_chr17_37021183_37022127
          Length = 945

 Score =  911 bits (471), Expect = 0.0
 Identities = 522/549 (95%), Gaps = 18/549 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttttctgacttccaaggacacatacacatcatacacatgtacacacgaacaatatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttttctgacttccaaggacacatacacatcatacacatgtacacacgaacaatatttt 260

                                                                       
Query: 61  tgagagaaagcaaatataaataatgtcaataattctaaatgcatgaaacaagatgggggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 tgagagaaagcaaatataaataatgtcaataattctaaatgcatgaaacaagacgggggc 320

                                                                       
Query: 121 atcatttaccatgtttaagataagtaagagagtttcagttttagaaacatatttaaagat 180
           |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 321 atcatttaccatgtttaagataagtaagagagttccggttttagaaacatatttaaagat 380

                                                                       
Query: 181 gttttaatttttaattatgtgcatgagtatgtgtctgcatatgaatatgtgcatgtgtat 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttttaatttttaattatgtgcaggagtatgtgtctgcatatgaatatgtgcatgtgtat 440

                                                                       
Query: 241 gggtgcccaaggagcctagacaagcactagcagcagatctcaggaagatagaattacata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggtgcccaaggagcctagacaagcactagcagcagatctcaggaagatagaattacata 500

                                                                       
Query: 301 caggtgattctgagccacctggtgtgggtgctgggaaccaaacttaggtcttctgagaga 360
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caggtggttctgagccacctggtgtgggtgctgggaaccaaacttaggtcttctgagaga 560

                                                                       
Query: 361 gcaatactccctcttaactacttagcctctaacgcctgcaaatgcacctcctctctctct 420
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 561 gcaatactccctcttaactacttagcctctaacgcctgtaaatgcacctcctctctctct 620

                                                                       
Query: 421 gtctctctctctctctctgtctctctctgtctctgtgtctctctctctgtttctgtctgt 480
           ||||| |             |||||||||||||||||||||||||||||||||||| |||
Sbjct: 621 gtctc-c-------------ctctctctgtctctgtgtctctctctctgtttctgtttgt 666

                                                                       
Query: 481 ctctgtctctctttctctctctgtgtctctctgtgt----gtgtgtgtgtgtgtgtgtgt 536
           |||||||||||| | |||||||||||||||||||||    ||||||||||||||||||||
Sbjct: 667 ctctgtctctctgtgtctctctgtgtctctctgtgtctctgtgtgtgtgtgtgtgtgtgt 726

                    
Query: 537 gtgtgtgtg 545
           |||||||||
Sbjct: 727 gtgtgtgtg 735


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)