Query= MSMg01no384_c16.b1 MSMg01no384_c16.b1 CHROMAT_FILE:
MSMg01no384_c16.b1 PHD_FILE: MSMg01no384_c16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:24 2005
(471 letters)
>mm_chr17_56482180_56483050
Length = 871
Score = 820 bits (424), Expect = 0.0
Identities = 447/458 (97%), Gaps = 7/458 (1%)
Strand = Plus / Minus
Query: 15 gaattc-acagaggagctggagagatggctcagtgggtgagagtgcttgctgcacaggac 73
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gaattcaacagaggagctggagagatggctcagtgggtgagagtgcttgctgcacaggac 561
Query: 74 ttgagtccaaatcccagcacccagctaaagggcagcactgagctgccagcaggggtaagg 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttgagtccaaatcccagcacccagctaaagggcagcactgagctgccagcaggggtaagg 501
Query: 134 gagtgtgagtacggggagtggaggtaaaggtgtttatagagataggagcttgcagaccac 193
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gagtgtgagtacggggagtagaggtaaaggtgtttatagagataggagcttgcagaccac 441
Query: 194 caatccagcaaaaaaatgatatcaaacagctcaggataggaaacttccaagaactgaaca 253
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cagtccagcaaaaaaatgatatcaaacagctcaggataggaaacttccaagaactgaaca 381
Query: 254 agaatgggtgggaggtagctggggcagccatgggttccagccccaacacctccagcaata 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agaatgggtgggaggtagctggggcagccatgggttccagccccaacacctccagcaata 321
Query: 314 aaagacctagtcctgccaggtgtggtggtgcacacctttaatcctagcacctgggaggca 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aaagacctagtcctgccaggtgtggtggtgcacacctttaatcctagcacctgg------ 267
Query: 374 gaggcagaggcaggcggatttctgagtttgaggccagcctggtctacagagtgagttcca 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gaggcagaggcaggcggatttctgagtttgaggccagcctggtctacagagtgagttcca 207
Query: 434 ggacagccagggctacagagaaaccctgtctcgaaaac 471
||||||||||| ||||| ||||||||||||||||||||
Sbjct: 206 ggacagccaggactacatagaaaccctgtctcgaaaac 169
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space: 396921
Effective search space used: 396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_c16.g1 MSMg01no384_c16.g1 CHROMAT_FILE:
MSMg01no384_c16.g1 PHD_FILE: MSMg01no384_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:24 2005
(515 letters)
>mm_chr17_56289095_56290010
Length = 916
Score = 919 bits (475), Expect = 0.0
Identities = 502/511 (98%), Gaps = 1/511 (0%)
Strand = Plus / Plus
Query: 6 tacccctcagctgcagagtgagtttgagaccactctggaccaccctagactctgtctaag 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 tacccctcagctgcagagtgagtttgagaccactctggaccaccctagactctgtctaag 265
Query: 66 aaagccacagagatatgagggcactagaggatgttagactctgtgtttcatctgaacagc 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aaagccacagagatatgagggcactagaggatgttagactctgtgtttcatctgaacagc 325
Query: 126 tggccaggccacctggattctgtctcagtttccccagcattaaaatgcatgctacaactg 185
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 326 tggccaggccacctggattctgtctcagtttccccagcattaaaatgcatgttacaactg 385
Query: 186 tccccatttggacaggccattgtggtgatggaggagtgagttctctagctctcacgtggc 245
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 386 tccccattcggacaggccattgtggtggtggaggagtgagttctctagctctcacgtggc 445
Query: 246 agggcagtctccccaaaccacctgcttcttctactcttgccaagggctgtactgtgcact 305
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 446 agggcagtctccccaaaccacctgcttcttctactcttgccaagggctgtgctgtgcact 505
Query: 306 gggtacctgaggttccaggacctcccaagcctccaggatgaatcagggacaggagagaca 365
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 506 gggtacctgaggttccaggacctcccaagcctccagaataaatcagggacaggagagaca 565
Query: 366 cagcttcttgacatctgcttgaagaccccatttctgagagtgacacaatggatctcttgt 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 cagcttcttgacatctgcttgaagaccccatttctgagagtgacacaatggatctcttgt 625
Query: 426 attttcactacatggac-accacagagccagatgatgaggaccctagaccatcactcctg 484
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 attttcactacatggaccaccacagagccagatgatgaggaccctagaccatcactcctg 685
Query: 485 ggctacatatagaaaatctcatataatcact 515
||| ||| |||||||||||||||||||||||
Sbjct: 686 ggccacacatagaaaatctcatataatcact 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 916
Length adjustment: 10
Effective length of query: 505
Effective length of database: 906
Effective search space: 457530
Effective search space used: 457530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
