BAC Information

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BAC

Clone NameMSMg01-385A14
Chromosome17 (Build37)
Map Location 11,097,180 - 11,284,758
singlet/doubletdoublet
Overlap genePark2
Upstream geneQk, LOC675815, Pacrg, LOC100041113
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385A14.T7 (MSMg01no385_a14.b1)MSMg01-385A14.TJ (MSMg01no385_a14.g1)
ACCAG488331AG488332
length727726
length of high quality
(start - end)		569 (35 - 603)510 (64 - 573)
definitionCHROMAT_FILE: MSMg01no385_a14.b1 PHD_FILE: MSMg01no385_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:29 2005CHROMAT_FILE: MSMg01no385_a14.g1 PHD_FILE: MSMg01no385_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,284,194 - 11,284,758)(11,097,180 - 11,097,689)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTTTG
AATGGAATGACATTTTCAAAAATCTCCTGTTACCTTCACTAACTATGATT
ATTGTGAGAATAGAGTCAAGTATGAAGTAGTCCTATAAACAAAGTCTTCA
CCAAGAGCCGCCATCCTTTTTCTCCAACTGCCTTGGATATACACCCTTCA
TCCACTATACTCCTTAAGAATTACTTCTATCCATGACAAATGTTTCCTCT
CTTGGGATCCTGGATCTGTCAGTCTTGATAGGAGTTGAGACCTTGGAATT
CCCTTTGCTTTAAACCAAACCGGATGTCTTTGCTATCAAAGAAGAAATTC
TCTGAAAAGAAAATCACCGTATTCTCTTGTTCATAGCTGAGATCCTATTT
TCTCATCTGGAAACAACGAGCACAGGAAGAAAGCTGCTCACGAAGTGCAA
GCTTCGCATTGTTGACAACAGAAAGCAGCAGTGACTAATGCCAGTGTTGT
GTGCCTTGAAGGTAACCCAGAGTTCTTTAAGTGGACTTAAGACCACTCAG
CAAGAGGGAAACCATGCTTGGTACCAGAAACCTAATCAACTACTCGGGGC
CTGTGGAATAAGGGTTCTCGGAGGAGAACCTACAACTACCACTTTCCTAA
GCCAGGATGATCCCTAAGTACATTCTAAACGTTTGTCCTTATGTACACAG
AAAAGTATAATCCTTAGCCTTCTTCAN

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXATGTCCTGGTGAGGAAGACAGATCTCTTGGATTGGCT
TGATGTCTGGAAAGGTAATTTAGTCATCAAACTGAATATGGGATCCATGT
GGAAATTCTAAGGGTGACACCCACCTCTTGGTTTAAATAATGAATAGAAT
GATGGAGCCATTCAATGGGATTTACATTTCTGAAGAATGACAAGGTCACA
TCTCCTAAAATGACAGATAACTTCTGTCCTGCTGCCCACAGCTGTCAGTT
GGTAGTTACTGCCTAGTGCTATAAATGAAGAAAGACCTCAAAACTCATTG
TGCAATTTTTCACATGCCTATTTAATTTAAAAGTACTCAGTACCCGTGTG
CTTCTGTGTAGTCTGAATTAGTTCATATTCCTAAGTTAACTCATGCATAC
ACAGCTAAAAGTTGCCAGGAGGGTAACTGTTTATAAATAGCAATCATTAG
TGAATGCTAACTATATACTAGGCACTAGTCTGGTATACAATCTATTCTGT
TATATTTAATTCTTAAATGCAGATTCCAATTTTGAATAGTAAAGGTGGAT
AATGAACCCTAACCTAATCAACTTAAATTTATAAAGTAACGCCCTTAACT
GGTTTTTTATTAATAAATTAATGGTATAAGGTAAATTCCTAATATTCAAT
GATCCCTGGAAAAGAAAATTTTATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_a14.b1 MSMg01no385_a14.b1 CHROMAT_FILE:
MSMg01no385_a14.b1 PHD_FILE: MSMg01no385_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:29 2005
         (569 letters)



>mm_chr17_11284092_11285060
          Length = 969

 Score = 1062 bits (549), Expect = 0.0
 Identities = 561/565 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactttgaatggaatgacattttcaaaaatctcctgttaccttcactaactatga 64
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 gaattcacttggaatggaatgacattttcaaaaatctcctgttaccttcactaactatga 608

                                                                       
Query: 65  ttattgtgagaatagagtcaagtatgaagtagtcctataaacaaagtcttcaccaagagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ttattgtgagaatagagtcaagtatgaagtagtcctataaacaaagtcttcaccaagagc 548

                                                                       
Query: 125 cgccatcctttttctccaactgccttggatatacacccttcatccactatactccttaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 cgccatcctttttctccaactgccttggatatacacccttcatccactatactccttaag 488

                                                                       
Query: 185 aattacttctatccatgacaaatgtttcctctcttgggatcctggatctgtcagtcttga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 aattacttctatccatgacaaatgtttcctctcttgggatcctggatctgtcagtcttga 428

                                                                       
Query: 245 taggagttgagaccttggaattccctttgctttaaaccaaaccggatgtctttgctatca 304
            |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 427 caggagttgagaccttggaattccctttgctttaaaccaaaccggatgtctttactatca 368

                                                                       
Query: 305 aagaagaaattctctgaaaagaaaatcaccgtattctcttgttcatagctgagatcctat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 aagaagaaattctctgaaaagaaaatcaccgtattctcttgttcatagctgagatcctat 308

                                                                       
Query: 365 tttctcatctggaaacaacgagcacaggaagaaagctgctcacgaagtgcaagcttcgca 424
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 307 tttctcatctggaaacaacgagcacaggaaggaagctgctcacgaagtgcaagcttcgca 248

                                                                       
Query: 425 ttgttgacaacagaaagcagcagtgactaatgccagtgttgtgtgccttgaaggtaaccc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ttgttgacaacagaaagcagcagtgactaatgccagtgttgtgtgccttgaaggtaaccc 188

                                                                       
Query: 485 agagttctttaagtggacttaagaccactcagcaagagggaaaccatgcttggtaccaga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 agagttctttaagtggacttaagaccactcagcaagagggaaaccatgcttggtaccaga 128

                                    
Query: 545 aacctaatcaactactcggggcctg 569
           |||||||||||||||||||||||||
Sbjct: 127 aacctaatcaactactcggggcctg 103


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no385_a14.g1 MSMg01no385_a14.g1 CHROMAT_FILE:
MSMg01no385_a14.g1 PHD_FILE: MSMg01no385_a14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:29 2005
         (510 letters)



>mm_chr17_11096980_11097889
          Length = 910

 Score =  986 bits (510), Expect = 0.0
 Identities = 510/510 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtcctggtgaggaagacagatctcttggattggcttgatgtctggaaaggtaatttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgtcctggtgaggaagacagatctcttggattggcttgatgtctggaaaggtaatttag 260

                                                                       
Query: 61  tcatcaaactgaatatgggatccatgtggaaattctaagggtgacacccacctcttggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatcaaactgaatatgggatccatgtggaaattctaagggtgacacccacctcttggtt 320

                                                                       
Query: 121 taaataatgaatagaatgatggagccattcaatgggatttacatttctgaagaatgacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaataatgaatagaatgatggagccattcaatgggatttacatttctgaagaatgacaa 380

                                                                       
Query: 181 ggtcacatctcctaaaatgacagataacttctgtcctgctgcccacagctgtcagttggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtcacatctcctaaaatgacagataacttctgtcctgctgcccacagctgtcagttggt 440

                                                                       
Query: 241 agttactgcctagtgctataaatgaagaaagacctcaaaactcattgtgcaatttttcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agttactgcctagtgctataaatgaagaaagacctcaaaactcattgtgcaatttttcac 500

                                                                       
Query: 301 atgcctatttaatttaaaagtactcagtacccgtgtgcttctgtgtagtctgaattagtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgcctatttaatttaaaagtactcagtacccgtgtgcttctgtgtagtctgaattagtt 560

                                                                       
Query: 361 catattcctaagttaactcatgcatacacagctaaaagttgccaggagggtaactgttta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catattcctaagttaactcatgcatacacagctaaaagttgccaggagggtaactgttta 620

                                                                       
Query: 421 taaatagcaatcattagtgaatgctaactatatactaggcactagtctggtatacaatct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taaatagcaatcattagtgaatgctaactatatactaggcactagtctggtatacaatct 680

                                         
Query: 481 attctgttatatttaattcttaaatgcaga 510
           ||||||||||||||||||||||||||||||
Sbjct: 681 attctgttatatttaattcttaaatgcaga 710


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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