Query= MSMg01no386_f20.b1 MSMg01no386_f20.b1 CHROMAT_FILE:
MSMg01no386_f20.b1 PHD_FILE: MSMg01no386_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:10 2005
(284 letters)
>mm_chr17_15202070_15202753
Length = 684
Score = 545 bits (282), Expect = e-160
Identities = 282/282 (100%)
Strand = Plus / Minus
Query: 1 ttcggatccataggttaaagaaacgaaagctactctcagctggggcttcaggtgaggact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ttcggatccataggttaaagaaacgaaagctactctcagctggggcttcaggtgaggact 423
Query: 61 tgagggagaccactgttttcccaatggttaattcatgtaaggctgtgaacggctggaatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tgagggagaccactgttttcccaatggttaattcatgtaaggctgtgaacggctggaatg 363
Query: 121 ttagtcacatacagtgaagacacgcacatagcaacacacgcatcacacagcccagtgtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ttagtcacatacagtgaagacacgcacatagcaacacacgcatcacacagcccagtgtga 303
Query: 181 cagagagaatccaaatcatctatgaggaagaaaagaagaagagccagcattggttgatac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 cagagagaatccaaatcatctatgaggaagaaaagaagaagagccagcattggttgatac 243
Query: 241 agtaggcacagagcagagcatctgctgcatcacttttttttt 282
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 agtaggcacagagcagagcatctgctgcatcacttttttttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no386_f20.g1 MSMg01no386_f20.g1 CHROMAT_FILE:
MSMg01no386_f20.g1 PHD_FILE: MSMg01no386_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:10 2005
(665 letters)
>mm_chr17_15046606_15047670
Length = 1065
Score = 1218 bits (630), Expect = 0.0
Identities = 656/670 (97%), Gaps = 10/670 (1%)
Strand = Plus / Plus
Query: 1 cttggttgttcagtcaggagacagatattattggactagcaggaccacagtctctaatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttggttgttcagtcaggagacagatattattggactagcaggaccacagtctctaatcc 260
Query: 61 actcaagtcccaaatatattttcattatatcagttctgtccctctagagaatcctgacca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actcaagtcccaaatatattttcattatatcagttctgtccctctagagaatcctgacca 320
Query: 121 catcaaccaagactcatactgggacagtagaatccagctgcaggtaagaagagcaaatgg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatcaaccaagactcatactgggacagtagaatccagctgcaggtaagaagagcaaatgg 380
Query: 181 atccaagaagaggtttggcttacctgagaactgcagacagctcacagcaacaggcttctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atccaagaagaggtttggcttacctgagaactgcagacagctcacagcaacaggcttctg 440
Query: 241 ggctacag-----ttttttgtctgctgagatttctgggtaggaaattctccaaagagcac 295
|||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggctacagcaacct-----gtctgctgagatttctgggtaggaaattctccaaagagcac 495
Query: 296 tctttactttaagaaaagtcatagtaaaaaccaagagataatttcaagtaagattagaaa 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tctttactttaagaaaagtcatagtaaaaaccaagagataatttcaagtaagattagaaa 555
Query: 356 taatctacaaattaagtacatttccctttatataaatatatcattttatataattaaaac 415
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 taatctacaaattaagtgcatttccctttatataaatatatcattttatataattaaaac 615
Query: 416 taaaaacctatctaaacttatagtcacaatcatgaataactctctaaaacaaatttgtat 475
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 616 taaaaacctatctaaacttatagtcacaatcatgaataactctttaaaacaaatttgtat 675
Query: 476 tttgtactgtcaaaaagacatgtatctttgtggatttgtgttcaagcatataaacacgtg 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tttgtactgtcaaaaagacatgtatctttgtggatttgtgttcaagcatataaacacgtg 735
Query: 536 tgcatgtgcataaagaggtcagaggtcaacttcagatgccattcttcagtgaatctccag 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tgcatgtgcataaagaggtcagaggtcaacttcagatgccattcttcagtgaatctccag 795
Query: 596 gatccttctctctccttccctcaatactgtgcttatgggcataaatgcccagcatttatg 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 796 gatccttctctctccttccctcaatactgtgcttatgggcataaatgcccagcatttgtg 855
Query: 656 tcagtgctaa 665
||||||||||
Sbjct: 856 tcagtgctaa 865
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space: 691025
Effective search space used: 691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
