CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTGTATTCTAGTCTATGCCTATAGCAGATCCTCTGCCACAG
GGCTCCATACCCAAATATATCCTGGAGGGAGAGAGCCTTCCAGGAGTGCA
GACAGGACTGTGAGTACAGGTAGGACCATCACTGCTGTTCAGAGTCCACC
CTTCTGGAACCATCAGGACATAGGAACCTAGGGGAAGCCTGGAGTGGGAG
CTTTCCAGTCTCTGTCTGCACCCAGAGCTGATCCTGTGCTACAGAGCTAC
ATACACAAATACCACCAGGATTGATCTGGTTTCCCAGGAGTGTCTAAACA
CCTGTGAGCACAGGTAAGACAACCACTTCTCTTCAAATTCCTGGCCCAAG
AGGGACACTCAGAGAGCAAGGACACGGGAACCATGGATCAGCTGGGGACA
AGATGCTTCTGGTCTCTGTCTGCATCCCAGAACTGACCCTATACCACAGC
TCTCCATACCCAAATTCCTCCTGGAGAGAACTGCTCTCCCAAGAGGACTA
ACACACAGGCTTGCAGGATGGACAAGCCAAAGTCAAAAGCAGAAAGACCA
GCTAACACCAGAGATAACCAGATGGCAAAGGGCAAGCACAAGAACATAAG
CAATAGAAACCAAGGCTACTTGACATCATCATCAGAACCCAATTCTCCCA
TCACAGCAAACCCTGGTTATCCCAACACACCAGAAAAGCAAGACTATGAT
TTTTA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCTATCATTGCCAGATTATGCGAATGAATGAA
TGAATTAAAATATCCCCCTCTCTTCTTCCCTTCCTTCCATAAGAAATTAC
AATATAGTAGGTCATGGTCATATAAAGGAAAGTTTTCGAGCAGAGGTAGA
GCTCTCTCTTCTGAGAGGACCAGTGTTGCTACCTCCTAGTAATAATAGTT
AAGACACATGACCACATGAACACAGGTAAGAAGCTAAGACATATCCACCC
AGCTTGGAGGGACTAGTATCTAGGCTCAGGGGTGACAGGGACAGTAGGAG
TGTTGTCAGCAGAGAGCTGGCTCACAGGTCTAGCAGCACACTCCTGGACT
CTGTGAATGAGATTGCTACATTTGATTAACAGTGAAGGAAGATTAGGTAA
GCAGCAATTAAAAATTTGACATTTGTGGCCAATTCAGCTTATTTAAAAGT
TATGCCAACTTAAACTCCTGCTGTAATTTATGCATATCTGTTAGGCAAAA
ATGTATTTCTGAAACACACATTACTTTGTTTTGTAGAGAAACTCTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCNCNNNTNNNTNTTTCCT
TTCCTCTCCTTTTTTTTCCTTTTTTTCTCCTTTCCTCCTCTTTTTTTTCC
CTCCCTTCCCCCCTCTCTTTTTTTCCCGTTTCGTCCCCC

Query= MSMg01no386_j18.g1 MSMg01no386_j18.g1 CHROMAT_FILE:
MSMg01no386_j18.g1 PHD_FILE: MSMg01no386_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:27 2005
         (562 letters)



>mm_chr17_58179131_58180092
          Length = 962

 Score =  835 bits (432), Expect = 0.0
 Identities = 499/526 (94%), Gaps = 12/526 (2%)
 Strand = Plus / Minus

                                                                       
Query: 4   atcattgccagattatgcgaatgaatgaatgaattaaaatatccccctctcttcttccct 63
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 atcattgccagattatgcaaatgaatgaatgaattaaaatatccccctctcttcttccct 850

                                                                       
Query: 64  tccttccataagaaattacaatatagtaggtcatggtcatataaaggaaagttttcgagc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 849 tccttccataagaaattacaatatagtaggtcatggtcatataaaggaaagtttttgagc 790

                                                                       
Query: 124 agagg-tagagctctctcttctgagaggaccagtgttgctacctcctagtaataatagtt 182
           || || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 789 ag-ggctagagctctctcttctgagaggaccagtgttgctagctcctagtaataatagtt 731

                                                                       
Query: 183 aagacacatgaccacatgaacacaggtaagaagctaagacatatccacccagcttggagg 242
           ||||        |||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 730 aaga--------cacatgaacacaggcaagaagctaagacatatccacccagcttagagg 679

                                                                       
Query: 243 gactagtatctaggctcaggggtgacagggacagtaggagtgttgtcagcagagagctgg 302
            ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 678 aactagtatctaggctcaggggtggcagggacagtaggagtgttgtcagcagagagctgg 619

                                                                       
Query: 303 ctcacaggtctagcagcacactcctggactctgtgaatgagattgctacatttgattaac 362
           ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 618 ctcacaggtctagcagcacactcctggaccctgtgaatgagattgctgcatttgattaac 559

                                                                       
Query: 363 agtgaaggaagattaggtaagcagcaattaaaaatttgacatttgtggccaattcagctt 422
           ||||||||||| |||||| |||||||||||||||| ||||| |||||| || ||||||||
Sbjct: 558 agtgaaggaaggttaggttagcagcaattaaaaatatgacagttgtggacagttcagctt 499

                                                                       
Query: 423 atttaaaagttatgccaacttaaac-tcctgctgtaatttatgcatatctgttaggcaaa 481
           ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 498 atttaaaagttatgccaacttaaacgt-ctgctgtaatttatgcatatctgttaggcaaa 440

                                                         
Query: 482 aatgtatttctgaaacacacattactttgttttgtagagaaactct 527
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aatgtatttctgaaacacacattactttgttttgtagagaaactct 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)