BAC Information

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BAC

Clone NameMSMg01-387P24
Chromosome17 (Build37)
Map Location 63,831,256 - 63,831,362
singlet/doubletsinglet
Overlap geneFbxl17
Upstream geneEfna5
Downstream genePpia-ps17_1026.1, LOC638867, LOC668677, A930002H24Rik, Fert2, LOC669778, Pja2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387P24.T7 (MSMg01no387_p24.b1)MSMg01-387P24.TJ (MSMg01no387_p24.g1)
ACCAG490601AG490602
length776805
length of high quality
(start - end)
380 (74 - 453)390 (79 - 468)
definitionCHROMAT_FILE: MSMg01no387_p24.b1 PHD_FILE: MSMg01no387_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:13 2005CHROMAT_FILE: MSMg01no387_p24.g1 PHD_FILE: MSMg01no387_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCTCCCTGTGCCATTTCATCCACCGCCTCAGGAAGGCTACTGGG
AGGCTCCTCAGATGCTATACACAGCAGCTACAAGATGTTTTCCTGGGCTG
GTCAGATGGCTCAGCGGTTAAGTGCACTGACTGCTCTTCCAAAGGTCCTG
AGTTCAAACCCCAGCAACCACATGGTGGCTCACAACCACCCATAATTAGA
TCTGATGCCCTCTTCTGGAGCGTCTGAAGACAGCTACGGTGTACATACAT
ATAATAAGAAATAAATAAATCTTTAAAAAAAAAAAAAAAATTTTTTCCTA
TTTGCCTTAAAGTATTTTCAGTCTGAGTCTACTAGTTTTCTATCATAAAA
TGTTGGGAATATATTACATGATGTCTGCATCACCCCTGAGTAGATCCCCC
ATAGTTTAGAAACATATACACCTGCATGCATACACCACACCCACCAATAA
TAACTTGCACATAAGATCCGCCCTATTTCCTCTTGCACCCGCGACCTGTG
ACCCCCCCTCGGAACGCCACTGCTACTTTTTCTACCTTTGGCCACCCCCA
CCAAAACTTCGAAATCCCCCCCCGTTTCCTTTTTTACAATACCCCCCTGG
GCTCCCCTTGTTTCTCTTTTTCGACCCTTCTCTGCCCCCGTTTCTTTTAT
TCGGATACCCCCCTCCTACCCCCTCTCCCAGGTCCCCCCTCTCTTTTCCA
CCTCCCCCCTCCCCCCGCTTCTTTCT
NTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCCGAGGAATACCAAAAGG
CTGAGAAACACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATG
CAAATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAA
GATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAAAG
GAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGG
AAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGA
TCCCGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTA
AGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTGTAATAGCC
AGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAA
AAAGTGGGGACATTTTACCCAAGGGAGGACTACTCCGGTATTAATAAGGA
ATGGAGTTTTGGGAATTTCCTAGGCGAAAGGGTTGGGGCCTGGAAAGGGT
TTCCCCCTGGGTGGAGTGACCCCCATCCCCTAAAGAACTCTCATTGGAGG
GTTCCCCCCCCAAACGCGGGTTACTGTTCTCCAAATTCTCTCAATGCGCG
GTTTTAGCCGGGCTCATGTGTACCTCCTGGTATCTTGTCTTCAACGCCAT
AACCCTCGCTGGGGCCCCTTTCTTCTCTTTATTCTATTTATCGCACTCTC
CCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_p24.b1 MSMg01no387_p24.b1 CHROMAT_FILE:
MSMg01no387_p24.b1 PHD_FILE: MSMg01no387_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:13 2005
         (380 letters)



>mm_chr17_63830787_63831566
          Length = 780

 Score =  207 bits (107), Expect = 9e-58
 Identities = 107/107 (100%)
 Strand = Plus / Plus

                                                                       
Query: 270 ttttcctatttgccttaaagtattttcagtctgagtctactagttttctatcataaaatg 329
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ttttcctatttgccttaaagtattttcagtctgagtctactagttttctatcataaaatg 529

                                                          
Query: 330 ttgggaatatattacatgatgtctgcatcacccctgagtagatcccc 376
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ttgggaatatattacatgatgtctgcatcacccctgagtagatcccc 576



 Score =  130 bits (67), Expect = 2e-34
 Identities = 70/71 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atccaccgcctcaggaaggctactgggaggctcctcagatgctatacacagcagctacaa 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 atccaccgcctaaggaaggctactgggaggctcctcagatgctatacacagcagctacaa 465

                      
Query: 61  gatgttttcct 71
           |||||||||||
Sbjct: 466 gatgttttcct 476


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)