BAC Information

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BAC

Clone NameMSMg01-388K03
Chromosome17 (Build37)
Map Location 37,525,620 - 37,526,186
singlet/doubletsinglet
Overlap genenone
Upstream geneGm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1
Downstream geneOlfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2, Olfr110, Olfr111, Olfr112, Olfr113, Olfr114, Olfr115, Olfr116, Olfr117, Olfr118, Olfr119, Scocp, Olfr120, Olfr1558-ps1, Olfr121, Olfr122, Olfr123, Olfr124, Olfr125, LOC672822, Olfr126, Olfr127, Olfr128, Ppia-ps17_697.1, Olfr761, Olfr1552-ps1, LOC100043265, Olfr129, Olfr130, Olfr131, Olfr132, Olfr133, Olfr134, Olfr135, Olfr138, Olfr137, Olfr762-ps1, Olfr136
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388K03.T7 (MSMg01no388_k03.b1)MSMg01-388K03.TJ (MSMg01no388_k03.g1)
ACCAG491081AG491082
length774769
length of high quality
(start - end)		402 (62 - 463)565 (76 - 640)
definitionCHROMAT_FILE: MSMg01no388_k03.b1 PHD_FILE: MSMg01no388_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:00 2005CHROMAT_FILE: MSMg01no388_k03.g1 PHD_FILE: MSMg01no388_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGAATTCCATTGCC
TTCCCTGTTGCCTAAGGGATAGCCTACCATAGTGATTCATCTAAGGGATC
ACTTTTTTTCACAGTTCAGCTACATGAACATGATAAGGAAAGGTTTGCTT
TCTCAGTACCTACCTTCAATAGAACTTGTCCAACAAAAAAATATCATTGG
AAAGTCCTGTCACAGAGAATGTTAAATAGCCCTACCTTGTGTCAATATTT
TGTATAACAGCCATTGGAAATGATTTGTAACAATGTCCCTAATCCATTAT
TTATCATTCTATGGATGATATCATATTGGCTGATTAGATATAAATATTCT
GAAAATAATGTTTGGTGAAGTAAAAAACAACAAAACAAAACAAAACCTTG
CCTTGTTGGGGATTGCAAATCACCACTGAAAAAATACAAAGAGAGGGTTT
CATTAATTATCTAGGATATAGATAAGTTTGAAAAAGGTTAGGCCACAAAA
AGGTACAAATCAGAAGAAGCCCATTAAGGACTCCTAATGATTTTCAGAAG
TTACTGCAAGATATTAACTGGCTGTGGCCTGCTATTGGGCTTGCCTACTC
ATGGGCTAAGCAATTTATTTTCAACCCTGCACGGTGATCAAGATTTTAAT
ACGCCCACTGACACTATCCACTTGTACGCTGAAAAAAAATAACTTGCGAC
AAAAGCAAATTGCCACGCAACCTTTTTCCGGACCCCCACTGTCCCCACAC
AATGCTCCCGTCGCTCCCCTCCTN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTTAGTCATATACAGGAATGGAAT
TGCAAGGGGAACATGGTAAAAATATTTTCAGTTCACCACTCAGTGGTGAG
ATTTGGAGAGGAAAGTTAAGAGCTTGTACTGAATATTCACTCCAGCCTCA
ATATCAGCCTCAGGTGGTGGTTCCCATTGCCTCCCACAGTCATGCTTCAG
CTCTCTTTCCAAAGAGGTATGTAAGGCTCTTTATGCCTCTGGCTCAGAAA
AAAGTGATGAAGGAATTTCAAATTACCTTCATGCCTCTGATTTCAAAAAA
TTATCCAAGAAGAGAAATTAAGTTGGATTCTTTAAAGTTGGAAAAAATCA
TTTCCCCCCCCACACACACACATCTAGTTTGTGGGATTTTAATCTACTGT
ATTTACAAGAGTATACAAATATAGCCATGATCTTCTTTTCTTCGTTTAAA
GAAACTATTCACAGCCAGGCGTGGTGGTGCATGCCTTTAATCCCAGAACT
CGGGAGGCAGAGGCAGGTGGATTTCTGATTTTGAGGCCAGCCTGGTCTAC
AAAGTGAGTTCCGGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAT
AAAGCAAAAACTAAAACAAAAAAACAAAAAATACACCCCCAAAAAAACCC
CTTAAAGAACGAAAGACAGAGAGAGACACACACACATACACAGAGAGAGA
GACACGAAAGAACTAATCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_k03.g1 MSMg01no388_k03.g1 CHROMAT_FILE:
MSMg01no388_k03.g1 PHD_FILE: MSMg01no388_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:00 2005
         (565 letters)



>mm_chr17_37525548_37526514
          Length = 967

 Score = 1069 bits (553), Expect = 0.0
 Identities = 563/567 (99%), Gaps = 2/567 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttagtcatatacaggaatggaattgcaaggggaacatggtaaaaatattttcagttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 ttttagtcatatacaggaatggaattgcaaggggaacatggtaaaaatattttcagttca 580

                                                                       
Query: 61  ccactcagtggtgagatttggagaggaaagttaagagcttgtactgaatattcactccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ccactcagtggtgagatttggagaggaaagttaagagcttgtactgaatattcactccag 520

                                                                       
Query: 121 cctcaatatcagcctcaggtggtggttcccattgcctcccacagtcatgcttcagctctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 cctcaatatcagcctcaggtggtggttcccattgcctcccacagtcatgcttcagctctc 460

                                                                       
Query: 181 tttccaaagaggtatgtaaggctctttatgcctctggctcagaaaaaagtgatgaaggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tttccaaagaggtatgtaaggctctttatgcctctggctcagaaaaaagtgatgaaggaa 400

                                                                       
Query: 241 tttcaaattaccttcatgcctctgatttcaaaaaattatccaagaagagaaattaagttg 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tttcaaattactttcatgcctctgatttcaaaaaattatccaagaagagaaattaagttg 340

                                                                       
Query: 301 gattctttaaagttggaaaaaatcatttcccccccc--acacacacacatctagtttgtg 358
           ||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||
Sbjct: 339 gattctttaaagttggaaaaaatcattcccccccccccacacacacacatctagtttgtg 280

                                                                       
Query: 359 ggattttaatctactgtatttacaagagtatacaaatatagccatgatcttcttttcttc 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ggattttaatctactgtatttacaagagtatacaaatatagccatgatcttcttttcttc 220

                                                                       
Query: 419 gtttaaagaaactattcacagccaggcgtggtggtgcatgcctttaatcccagaactcgg 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 gtttaaagaaactattcacagccaggcgtggtggtgcatgcctttaatcccagaactcgg 160

                                                                       
Query: 479 gaggcagaggcaggtggatttctgattttgaggccagcctggtctacaaagtgagttccg 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 gaggcagaggcaggtggatttctgattttgaggccagcctggtctacaaagtgagttccg 100

                                      
Query: 539 ggacagccagggctatacagagaaacc 565
           |||||||||||||||||||||||||||
Sbjct: 99  ggacagccagggctatacagagaaacc 73


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 967
Length adjustment: 10
Effective length of query: 555
Effective length of database: 957
Effective search space:   531135
Effective search space used:   531135
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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