BAC Information

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BAC

Clone NameMSMg01-388K22
Chromosome17 (Build37)
Map Location 79,716,320 - 79,909,562
singlet/doubletdoublet
Overlap geneCdc42ep3, LOC639964
Upstream geneCrim1, Fez2, LOC100043888, Hdac1-ps, Vit, Strn, Heatr5b, 2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812, LOC383277
Downstream geneAW061290, Cyp1b1, EG668821, Arl6ip2, LOC625074, Hnrpll, Gpx4-ps, Galm, Sfrs7, 4930560E09Rik, Gemin6, Dhx57, Morn2, Sos1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388K22.T7 (MSMg01no388_k22.b1)MSMg01-388K22.TJ (MSMg01no388_k22.g1)
ACCAG491118AG491119
length792777
length of high quality
(start - end)		393 (51 - 443)465 (77 - 541)
definitionCHROMAT_FILE: MSMg01no388_k22.b1 PHD_FILE: MSMg01no388_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:04 2005CHROMAT_FILE: MSMg01no388_k22.g1 PHD_FILE: MSMg01no388_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,909,170 - 79,909,562)(79,716,320 - 79,716,784)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
CAAGGCACGTGCCCTTCTTGGATGCCATCCAAAAGAAGACATTATCAGAA
GGACCTCGTAATACAGGCTCCAGGAATGGTGCTGTTGGTAAGCCTCAGGG
TAGCTAGTGGGACACTGGGGCTTGTCATATATGCTTGCTCACCCAGTCAA
GCCTTGGTGACGTAGATGTCCACAACCTTCCCTACCACTTGCCTATCCCT
TGTTTCTTCGCTGAGTGGTTGATTGCCTAGCTGGTTCTTGGACCACTCTG
GATGTTGGCGTGGTATGATTATTACTTGTTTGATTTTTCTAACAATCTGT
TGTTTTCTATCAGCACCGCCTCTGCTCCACCTCATGTTCTTGACTAATTA
TGGTTGCTAATTAGAAGTCTGCTAACGGGGTCTGCTTTCCACAAGCACTA
AGACTATGACGAGACACTAAGACGATGTAACCATCACAAAAGGAAAAGTC
CACCTGGTCAGGCTCAAGTAAGTAAGGTTTACCGACTCTGCTTGGAAGGT
CTCACTGGCTTTTACCTGCAAACCGGCTTTGACTCCCTCTACCATTTAAA
GCCTCTTAATGAAAGCTTGTACCTGCCCCACCCCAAAAAAATAAAAAAAA
CTGAAGCTGCCTCAAAAATTGTCCCCGCCAAAAAATTGCCCAGACCGGAA
TCCTTTTTTCTCCGTATTTTTTGTGAAAAAAACCACTCTTATGAATTTCC
CCTTTTTCCTCCGCCCCCTGGGCTTGTTTTCCCCCTCTTCAC

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTCCAAGCACACAGTGAGAACAG
AGGGCTCTTCTTATCCACCTCTGCTCCTGAGCTCACCTGGCCCACTCACC
TGGCTCCCCACCAGGAGCCTGAGAACGTAGATGTAACGTGGGGGGGACTT
GTTCAAATGCTCGGCATTGTATGAAGAGTTCACTCCTACTCCCCCAAGTG
AGGCATTATGAATGCGGACCTGATAATGCACCATTGTAAGCGAAGGAAAA
GGCTCAGACTTTGTGGTGGATCTTTCAGAGTGCAGTAATTCTGGAGAGTA
ATTATGGAGCAAGAGACTGATTAAACAAACTGCAGACTAAACAGTTAGGC
TCTGCGTGTGAGGCCAGCTGACAAAGCAGAGGTAATTAATAGGCAGTTAC
AACATGGAAGATTCTGGAAAACATAGTTTTGAAGTTTCAAATCCACACTC
TGACAGAAGAATATTAGAAAGATAGATGTGGTAGGGACTAAGGAGTCTTG
TGGGGAAAGACATTTGCAATCACTTTTGGAAAGAATCCCTTGGTGGGGTT
TGGTTCCCACAATCCCTTTTAGGAGAGCATTCCCTCCCGTGTTGGGGGTG
GCACTAACATGCCTTGAAAAAATGCTTGAGAAAAAGACCCCCCTTCACGC
TGTATAGCAAGCTGCTGCCGGGACCCAAACCTTTGTTAATTTTTTTGAAA
TTGGCCGGCGTGGTCCCCGGTCTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_k22.b1 MSMg01no388_k22.b1 CHROMAT_FILE:
MSMg01no388_k22.b1 PHD_FILE: MSMg01no388_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:04 2005
         (393 letters)



>mm_chr17_79908970_79909762
          Length = 793

 Score =  760 bits (393), Expect = 0.0
 Identities = 393/393 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaggcacgtgcccttcttggatgccatccaaaagaagacattatcagaaggacctcgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 caaggcacgtgcccttcttggatgccatccaaaagaagacattatcagaaggacctcgta 534

                                                                       
Query: 61  atacaggctccaggaatggtgctgttggtaagcctcagggtagctagtgggacactgggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 atacaggctccaggaatggtgctgttggtaagcctcagggtagctagtgggacactgggg 474

                                                                       
Query: 121 cttgtcatatatgcttgctcacccagtcaagccttggtgacgtagatgtccacaaccttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 cttgtcatatatgcttgctcacccagtcaagccttggtgacgtagatgtccacaaccttc 414

                                                                       
Query: 181 cctaccacttgcctatcccttgtttcttcgctgagtggttgattgcctagctggttcttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 cctaccacttgcctatcccttgtttcttcgctgagtggttgattgcctagctggttcttg 354

                                                                       
Query: 241 gaccactctggatgttggcgtggtatgattattacttgtttgatttttctaacaatctgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gaccactctggatgttggcgtggtatgattattacttgtttgatttttctaacaatctgt 294

                                                                       
Query: 301 tgttttctatcagcaccgcctctgctccacctcatgttcttgactaattatggttgctaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tgttttctatcagcaccgcctctgctccacctcatgttcttgactaattatggttgctaa 234

                                            
Query: 361 ttagaagtctgctaacggggtctgctttccaca 393
           |||||||||||||||||||||||||||||||||
Sbjct: 233 ttagaagtctgctaacggggtctgctttccaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space:   301056
Effective search space used:   301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no388_k22.g1 MSMg01no388_k22.g1 CHROMAT_FILE:
MSMg01no388_k22.g1 PHD_FILE: MSMg01no388_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:04 2005
         (465 letters)



>mm_chr17_79716120_79716984
          Length = 865

 Score =  891 bits (461), Expect = 0.0
 Identities = 464/465 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttccaagcacacagtgagaacagagggctcttcttatccacctctgctcctgagctcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttccaagcacacagtgagaacagagggctcttcttatccacctctgctcctgagctcac 260

                                                                       
Query: 61  ctggcccactcacctggctccccaccaggagcctgagaacgtagatgtaacgtggggggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggcccactcacctggctccccaccaggagcctgagaacgtagatgtaacgtggggggg 320

                                                                       
Query: 121 acttgttcaaatgctcggcattgtatgaagagttcactcctactcccccaagtgaggcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttgttcaaatgctcggcattgtatgaagagttcactcctactcccccaagtgaggcat 380

                                                                       
Query: 181 tatgaatgcggacctgataatgcaccattgtaagcgaaggaaaaggctcagactttgtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatgaatgcggacctgataatgcaccattgtaagcgaaggaaaaggctcagactttgtgg 440

                                                                       
Query: 241 tggatctttcagagtgcagtaattctggagagtaattatggagcaagagactgattaaac 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggagctttcagagtgcagtaattctggagagtaattatggagcaagagactgattaaac 500

                                                                       
Query: 301 aaactgcagactaaacagttaggctctgcgtgtgaggccagctgacaaagcagaggtaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaactgcagactaaacagttaggctctgcgtgtgaggccagctgacaaagcagaggtaat 560

                                                                       
Query: 361 taataggcagttacaacatggaagattctggaaaacatagttttgaagtttcaaatccac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taataggcagttacaacatggaagattctggaaaacatagttttgaagtttcaaatccac 620

                                                        
Query: 421 actctgacagaagaatattagaaagatagatgtggtagggactaa 465
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actctgacagaagaatattagaaagatagatgtggtagggactaa 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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